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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3268-RA through 18771 annotations produced 1 hits



putative homeodomain transcription factor (phtf):

Annotation Number : CG3268
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028579
Gbrowse : chr2R:2629371-2633649 (+) // 100.0 //
Probeset : 1641378_at
Accessions : protein= NP_610232;, nucleotide= NM_136388;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0028579.
BDGP gene expression has embryonic in situ data for phtf: 11 pix of staining in 5 body parts.
BioGrid reports that CG3268 interacts with CG8155 .
TRiP has 1 RNAi stocks for FBgn0028579 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028579 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain430 74 of 4 2.40Up
Head180 64 of 4 1.00None
Eye285 264 of 4 1.58Up
Thoracicoabdominal ganglion381 54 of 4 2.10Up
Salivary gland185 44 of 4 1.03None
Crop120 34 of 4 0.70Down
Midgut82 44 of 4 0.50Down
Tubule98 34 of 4 0.50Down
Hindgut116 54 of 4 0.60Down
Heart196 114 of 4 1.09None
Fat body164 54 of 4 0.91None
Ovary283 34 of 4 1.60Up
Testis410 34 of 4 2.30Up
Male accessory glands107 44 of 4 0.60Down
Virgin spermatheca180 64 of 4 1.00None
Mated spermatheca184 114 of 4 1.02None
Adult carcass123 74 of 4 0.70Down
Larval CNS165 104 of 4 0.92None
Larval Salivary gland97 24 of 4 0.54Down
Larval midgut113 84 of 4 0.63Down
Larval tubule100 34 of 4 0.60Down
Larval hindgut115 54 of 4 0.64Down
Larval fat body145 264 of 4 0.80None
Larval trachea106 104 of 4 0.59Down
Larval carcass91 54 of 4 0.51Down
S2 cells (growing)105 34 of 4 0.59Down
Whole fly180 134 of 4

Looking for CG3268-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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