FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG32680-RB through 18771 annotations produced 1 hits

Sprint (spri):

Annotation Number : CG32680
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085443
Gbrowse : chrX:10386494-10387770 (-) // 100.0 //
Probeset : 1626771_at
Accessions : protein= NP_001096941; /// NP_001096944; /// NP_788896; /// NP_996401;, nucleotide= NM_001103471; /// NM_001103474; /// NM_176723; /// NM_206678;
Interpro : 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0085443.
VDRC has 9 RNAi stocks for FBgn0085443 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	0 of 4	0.70	None
Head	4 ± 1	0 of 4	0.90	None
Eye	1 ± 0	0 of 4	0.26	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.60	None
Salivary gland	3 ± 2	0 of 4	0.75	None
Crop	5 ± 1	0 of 4	1.10	None
Midgut	3 ± 1	0 of 4	0.80	None
Tubule	30 ± 4	3 of 4	6.50	Up
Hindgut	10 ± 1	1 of 4	2.30	None
Heart	3 ± 1	0 of 4	0.79	None
Fat body	9 ± 2	0 of 4	1.96	None
Ovary	2 ± 0	0 of 4	0.40	None
Testis	2 ± 1	0 of 4	0.50	None
Male accessory glands	4 ± 1	0 of 4	0.90	None
Virgin spermatheca	0 ± 0	0 of 4	0.16	None
Mated spermatheca	2 ± 0	0 of 4	0.56	None
Adult carcass	6 ± 2	0 of 4	1.40	None
Larval CNS	1 ± 1	0 of 4	0.37	None
Larval Salivary gland	3 ± 2	1 of 4	0.77	None
Larval midgut	2 ± 1	0 of 4	0.61	None
Larval tubule	9 ± 0	2 of 4	2.10	None
Larval hindgut	3 ± 1	1 of 4	0.63	None
Larval fat body	1 ± 0	0 of 4	0.40	None
Larval trachea	1 ± 0	0 of 4	0.24	None
Larval carcass	2 ± 0	0 of 4	0.52	None
S2 cells (growing)	132 ± 9	4 of 4	28.08	Up
Whole fly	4 ± 2	0 of 4

Looking for CG32680-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720