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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32683-RA through 18771 annotations produced 1 hits



(CG32683):

Annotation Number : CG32683
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052683
Gbrowse : chrX:10304423-10348928 (-) // 99.92 //
Probeset : 1624523_at
Accessions : protein= NP_727419;, nucleotide= NM_167230;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052683.
Homophila reports that CG32683 is a close match (7e-16) to human gene SAG (NP_000532), a gene associated with Oguchi disease-1, 258100 (3).
VDRC has 2 RNAi stocks for FBgn0052683 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain283 ± 74 of 439.30Up
Head35 ± 14 of 4 5.00Up
Eye11 ± 13 of 4 1.58None
Thoracicoabdominal ganglion128 ± 94 of 417.80Up
Salivary gland9 ± 20 of 4 1.31None
Crop4 ± 11 of 4 0.60None
Midgut6 ± 10 of 4 0.90None
Tubule4 ± 10 of 4 0.60None
Hindgut5 ± 10 of 4 0.70None
Heart1 ± 10 of 4 0.24None
Fat body3 ± 20 of 4 0.45None
Ovary1 ± 00 of 4 0.20Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands5 ± 10 of 4 0.80None
Virgin spermatheca1 ± 00 of 4 0.25None
Mated spermatheca6 ± 20 of 4 0.94None
Adult carcass4 ± 31 of 4 0.70None
Larval CNS88 ± 64 of 412.34Up
Larval Salivary gland5 ± 10 of 4 0.76None
Larval midgut9 ± 20 of 4 1.33None
Larval tubule8 ± 00 of 4 1.10None
Larval hindgut2 ± 10 of 4 0.39None
Larval fat body1 ± 00 of 4 0.20None
Larval trachea1 ± 10 of 4 0.15Down
Larval carcass1 ± 00 of 4 0.24None
S2 cells (growing)1 ± 00 of 4 0.23None
Whole fly7 ± 10 of 4

Looking for CG32683-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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