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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32687-RA through 18771 annotations produced 1 hits



(CG32687):

Annotation Number : CG32687
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052687
Gbrowse : chrX:10376060-10380660 (-) // 100.0 //
Probeset : 1626724_at
Accessions : protein= NP_727428;, nucleotide= NM_167233;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0052687.
BDGP gene expression has embryonic in situ data for CG32687: 11 pix of staining in 5 body parts.
Homophila reports that CG32687 is a close match (3e-13) to human gene LRRC8;KIAA1437 (NP_062540), a gene associated with Agammaglobulinemia, non-Bruton type, 601495 (3).
BioGrid reports that CG32687 interacts with CG8003 .
VDRC has 3 RNAi stocks for FBgn0052687 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 14 of 4 0.10None
Head241 ± 374 of 4 1.60None
Eye728 ± 2654 of 4 4.81None
Thoracicoabdominal ganglion13 ± 32 of 4 0.10None
Salivary gland432 ± 264 of 4 2.86Up
Crop139 ± 124 of 4 0.90None
Midgut1125 ± 904 of 4 7.40Up
Tubule21 ± 33 of 4 0.10Down
Hindgut287 ± 264 of 4 1.90None
Heart768 ± 1534 of 4 5.07Up
Fat body1917 ± 2004 of 412.67Up
Ovary31 ± 44 of 4 0.20None
Testis19 ± 33 of 4 0.10None
Male accessory glands40 ± 34 of 4 0.30None
Virgin spermatheca2077 ± 864 of 413.72Up
Mated spermatheca1772 ± 994 of 411.71Up
Adult carcass277 ± 494 of 4 1.80None
Larval CNS21 ± 64 of 4 0.14None
Larval Salivary gland235 ± 194 of 4 1.56None
Larval midgut2569 ± 2414 of 416.98Up
Larval tubule159 ± 274 of 4 1.10None
Larval hindgut348 ± 774 of 4 2.30None
Larval fat body1074 ± 3784 of 4 7.10None
Larval trachea22 ± 281 of 4 0.15None
Larval carcass76 ± 94 of 4 0.50None
S2 cells (growing)369 ± 54 of 4 2.44Up
Whole fly151 ± 574 of 4

Looking for CG32687-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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