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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32693-RA through 18771 annotations produced 1 hits



Gr9a (Gr9a):

Annotation Number : CG32693
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052693
Gbrowse : chrX:9955659-9956818 (+) // 100.0 //
Probeset : 1631254_at
Accessions : protein= NP_727392;, nucleotide= NM_167217;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0052693.
VDRC has 3 RNAi stocks for FBgn0052693 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.30None
Head1 ± 00 of 4 0.70None
Eye1 ± 00 of 4 0.64None
Thoracicoabdominal ganglion0 ± 00 of 4 0.40None
Salivary gland4 ± 20 of 4 2.30None
Crop1 ± 00 of 4 0.60None
Midgut2 ± 10 of 4 1.20None
Tubule1 ± 00 of 4 0.80None
Hindgut0 ± 00 of 4 0.40None
Heart0 ± 00 of 4 0.25None
Fat body3 ± 40 of 4 1.83None
Ovary0 ± 00 of 4 0.30None
Testis1 ± 00 of 4 0.50None
Male accessory glands2 ± 10 of 4 1.40None
Virgin spermatheca2 ± 00 of 4 1.33None
Mated spermatheca4 ± 20 of 4 1.94None
Adult carcass1 ± 00 of 4 0.80None
Larval CNS2 ± 00 of 4 1.35None
Larval Salivary gland2 ± 10 of 4 1.05None
Larval midgut1 ± 00 of 4 0.79None
Larval tubule0 ± 00 of 4 0.30None
Larval hindgut0 ± 00 of 4 0.25None
Larval fat body1 ± 00 of 4 0.50None
Larval trachea1 ± 00 of 4 0.61None
Larval carcass0 ± 00 of 4 0.40None
S2 cells (growing)1 ± 00 of 4 0.49None
Whole fly2 ± 10 of 4

Looking for CG32693-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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