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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32697-RD through 18771 annotations produced 1 hits



lethal (1) G0232 (l(1)G0232):

Annotation Number : CG32697
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028341
Gbrowse : chrX:9522754-9534655 (-) // 99.84 //
Probeset : 1633682_a_at
Accessions : protein= NP_001014728; /// NP_001014729; /// NP_572576; /// NP_727356; /// NP_727357; /// NP_727358;, nucleotide= NM_001014728; /// NM_001014729; /// NM_132348; /// NM_167197; /// NM_167198; /// NM_167199;
Pathway : engulfment // inferred from mutant phenotype /// 0016311 // dephosphorylation // inferred from electronic annotation"
FlyMine data for FBgn0028341.
Homophila reports that CG32697 is a close match (4e-15) to human gene RLBP1 (NP_000317), a gene associated with Bothnia retinal dystrophy, 607475 (3);Fundus albipunctatus, 136880 (3);Newfoundland rod-cone dystrophy, 607476 (3);Retinitis pigmentosa, AR, 268000 (3);Retinitis punctata albescens, 136880 (3).
TRiP has 1 RNAi stocks for FBgn0028341 available for purchase.
VDRC has 4 RNAi stocks for FBgn0028341 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain204 ± 54 of 4 0.80Down
Head93 ± 84 of 4 0.40Down
Eye291 ± 134 of 4 1.17None
Thoracicoabdominal ganglion148 ± 174 of 4 0.60Down
Salivary gland195 ± 94 of 4 0.79Down
Crop178 ± 124 of 4 0.70Down
Midgut159 ± 64 of 4 0.60Down
Tubule377 ± 214 of 4 1.50Up
Hindgut137 ± 94 of 4 0.60Down
Heart201 ± 104 of 4 0.81Down
Fat body87 ± 64 of 4 0.35Down
Ovary469 ± 154 of 4 1.90Up
Testis228 ± 144 of 4 0.90None
Male accessory glands140 ± 94 of 4 0.60Down
Virgin spermatheca72 ± 24 of 4 0.29Down
Mated spermatheca77 ± 24 of 4 0.31Down
Adult carcass139 ± 104 of 4 0.60Down
Larval CNS109 ± 114 of 4 0.44Down
Larval Salivary gland152 ± 164 of 4 0.61Down
Larval midgut237 ± 174 of 4 0.96None
Larval tubule518 ± 194 of 4 2.10Up
Larval hindgut153 ± 84 of 4 0.62Down
Larval fat body306 ± 264 of 4 1.20None
Larval trachea163 ± 104 of 4 0.66Down
Larval carcass156 ± 234 of 4 0.63Down
S2 cells (growing)203 ± 94 of 4 0.82None
Whole fly248 ± 154 of 4

Looking for CG32697-RD. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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