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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32701-RA through 18771 annotations produced 1 hits



lethal (1) G0320 (l(1)G0320):

Annotation Number : CG32701
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028327
Gbrowse : chrX:9445637-9447703 (-) // 100.0 //
Probeset : 1626456_at
Accessions : protein= NP_572567;, nucleotide= NM_132339;
Pathway : 0005785 // signal recognition particle receptor complex // inferred from sequence or structural similarity /// 0005811 /
Interpro : 0005048 // signal sequence binding // inferred from sequence or structural similarity
FlyMine data for FBgn0028327.
VDRC has 2 RNAi stocks for FBgn0028327 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain147 44 of 4 0.90None
Head148 224 of 4 0.90None
Eye179 164 of 4 1.11None
Thoracicoabdominal ganglion152 244 of 4 0.90None
Salivary gland423 234 of 4 2.63Up
Crop80 44 of 4 0.50Down
Midgut286 24 of 4 1.80Up
Tubule79 154 of 4 0.50Down
Hindgut119 54 of 4 0.70Down
Heart429 744 of 4 2.66Up
Fat body398 594 of 4 2.47Up
Ovary173 54 of 4 1.10None
Testis100 64 of 4 0.60Down
Male accessory glands932 434 of 4 5.80Up
Virgin spermatheca216 144 of 4 1.34Up
Mated spermatheca336 434 of 4 2.09Up
Adult carcass377 404 of 4 2.30Up
Larval CNS88 64 of 4 0.55Down
Larval Salivary gland600 474 of 4 3.72Up
Larval midgut299 164 of 4 1.85Up
Larval tubule69 24 of 4 0.40Down
Larval hindgut313 264 of 4 1.94Up
Larval fat body283 564 of 4 1.80None
Larval trachea374 854 of 4 2.32Up
Larval carcass168 174 of 4 1.04None
S2 cells (growing)890 234 of 4 5.52Up
Whole fly161 104 of 4

Looking for CG32701-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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