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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32713-RA through 18771 annotations produced 1 hits



/// /// (CG32713 /// CG33223 /// DsimCG32713):

Annotation Number : CG32713
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052713 /// FBgn0053223
Gbrowse : chrX:8351038-8351593 (-) // 100.0 // /// chrX:8359790-8360345 (-) // 98.38 //
Probeset : 1633593_s_at
Accessions : protein= NP_727264; /// NP_996378;, nucleotide= NM_167156; /// NM_206655;
FlyMine data for FBgn0052713 /// FBgn0053223.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye5 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.01Down
Crop2 ± 10 of 4 0.00Down
Midgut7 ± 20 of 4 0.10Down
Tubule2 ± 00 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart4 ± 10 of 4 0.04Down
Fat body11 ± 60 of 4 0.09Down
Ovary3 ± 10 of 4 0.00Down
Testis1532 ± 104 of 412.10Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca16 ± 32 of 4 0.13Down
Mated spermatheca15 ± 23 of 4 0.12Down
Adult carcass3 ± 10 of 4 0.00Down
Larval CNS4 ± 10 of 4 0.04Down
Larval Salivary gland5 ± 20 of 4 0.04Down
Larval midgut7 ± 20 of 4 0.06Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body131 ± 614 of 4 1.00None
Larval trachea8 ± 101 of 4 0.06Down
Larval carcass2 ± 10 of 4 0.02Down
S2 cells (growing)2 ± 10 of 4 0.02Down
Whole fly127 ± 24 of 4

Looking for CG32713-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime