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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32732-RA through 18771 annotations produced 1 hits



(CG32732):

Annotation Number : CG32732
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052732
Gbrowse : chrX:6852043-6862746 (-) // 100.0 //
Probeset : 1632261_at
Accessions : protein= NP_727144;, nucleotide= NM_167100;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052732.
BioGrid reports that CG32732 interacts with CG9240 CG4059 CG4759 CG9046 .
VDRC has 4 RNAi stocks for FBgn0052732 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 ± 54 of 4 0.90None
Head55 ± 34 of 4 0.50Down
Eye26 ± 34 of 4 0.26Down
Thoracicoabdominal ganglion79 ± 44 of 4 0.80None
Salivary gland66 ± 23 of 4 0.65Down
Crop55 ± 64 of 4 0.50Down
Midgut59 ± 34 of 4 0.60Down
Tubule42 ± 63 of 4 0.40Down
Hindgut53 ± 14 of 4 0.50Down
Heart48 ± 34 of 4 0.47Down
Fat body72 ± 94 of 4 0.71None
Ovary216 ± 34 of 4 2.10Up
Testis17 ± 24 of 4 0.20Down
Male accessory glands64 ± 34 of 4 0.60Down
Virgin spermatheca62 ± 44 of 4 0.61Down
Mated spermatheca77 ± 64 of 4 0.76None
Adult carcass91 ± 54 of 4 0.90None
Larval CNS178 ± 154 of 4 1.75Up
Larval Salivary gland63 ± 64 of 4 0.62Down
Larval midgut56 ± 24 of 4 0.56Down
Larval tubule34 ± 24 of 4 0.30Down
Larval hindgut82 ± 84 of 4 0.81None
Larval fat body31 ± 14 of 4 0.30Down
Larval trachea85 ± 114 of 4 0.83None
Larval carcass100 ± 184 of 4 0.98None
S2 cells (growing)138 ± 44 of 4 1.36Up
Whole fly102 ± 104 of 4

Looking for CG32732-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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