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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32741-RA through 18771 annotations produced 1 hits



():

Annotation Number : CG32741
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:6589895-6592536 (+) // 100.0 //
Probeset : 1624659_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 5.40None
Head2 ± 10 of 4 2.10None
Eye4 ± 10 of 4 4.00None
Thoracicoabdominal ganglion10 ± 30 of 4 9.60None
Salivary gland14 ± 50 of 412.75None
Crop10 ± 10 of 4 9.50Up
Midgut3 ± 20 of 4 3.10None
Tubule7 ± 00 of 4 6.40Up
Hindgut2 ± 10 of 4 2.30None
Heart2 ± 10 of 4 2.36None
Fat body4 ± 20 of 4 4.20None
Ovary3 ± 00 of 4 3.10Up
Testis1 ± 00 of 4 1.80None
Male accessory glands3 ± 10 of 4 3.40None
Virgin spermatheca13 ± 10 of 412.20Up
Mated spermatheca12 ± 10 of 411.09Up
Adult carcass8 ± 30 of 4 7.30None
Larval CNS4 ± 30 of 4 4.41None
Larval Salivary gland7 ± 10 of 4 6.48Up
Larval midgut3 ± 00 of 4 3.23None
Larval tubule14 ± 00 of 412.80Up
Larval hindgut3 ± 00 of 4 2.93None
Larval fat body3 ± 00 of 4 3.10Up
Larval trachea2 ± 20 of 4 2.59None
Larval carcass3 ± 10 of 4 3.05None
S2 cells (growing)3 ± 00 of 4 3.11None
Whole fly1 ± 00 of 4

Looking for CG32741-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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