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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32754-RA through 18771 annotations produced 1 hits



vanin-like (vanin-like):

Annotation Number : CG32754
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040069
Gbrowse : chrX:6094219-6096592 (-) // 100.0 //
Probeset : 1636507_at
Accessions : protein= NP_572297;, nucleotide= NM_132069;
Pathway : 0019898 // extrinsic to membrane // non-traceable author statement
Interpro : "0016787 // hydrolase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // non-traceable
FlyMine data for FBgn0040069.
BDGP gene expression has embryonic in situ data for vanin-like: 4 pix of staining in 1 body parts.
Homophila reports that CG32754 is a close match (3e-31) to human gene HDLCQ8;VNN1 (NP_004657), a gene associated with [High density lipoprotein cholesterol level QTL 8] (3).
VDRC has 6 RNAi stocks for FBgn0040069 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 04 of 4 0.20Down
Head9 ± 10 of 4 0.10Down
Eye4 ± 21 of 4 0.04Down
Thoracicoabdominal ganglion16 ± 11 of 4 0.10Down
Salivary gland9 ± 00 of 4 0.07Down
Crop8 ± 10 of 4 0.10Down
Midgut1642 ± 494 of 412.40Up
Tubule292 ± 334 of 4 2.20Up
Hindgut827 ± 764 of 4 6.20Up
Heart2 ± 10 of 4 0.02Down
Fat body8 ± 41 of 4 0.06Down
Ovary2 ± 10 of 4 0.00Down
Testis3 ± 10 of 4 0.00Down
Male accessory glands10 ± 20 of 4 0.10Down
Virgin spermatheca38 ± 34 of 4 0.29Down
Mated spermatheca41 ± 34 of 4 0.31Down
Adult carcass6 ± 30 of 4 0.10Down
Larval CNS4 ± 10 of 4 0.04Down
Larval Salivary gland7 ± 10 of 4 0.06Down
Larval midgut2090 ± 2344 of 415.72Up
Larval tubule274 ± 224 of 4 2.10Up
Larval hindgut1351 ± 594 of 410.17Up
Larval fat body7 ± 20 of 4 0.10Down
Larval trachea3 ± 20 of 4 0.02Down
Larval carcass5 ± 10 of 4 0.04Down
S2 cells (growing)5 ± 00 of 4 0.04Down
Whole fly133 ± 234 of 4

Looking for CG32754-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime