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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32762-RA through 18771 annotations produced 1 hits



(CG32762):

Annotation Number : CG32762
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052762
Gbrowse : chrX:5394297-5395219 (-) // 100.0 //
Probeset : 1630192_at
Accessions : protein= NP_727000;, nucleotide= NM_167039;
Interpro : 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inf
FlyMine data for FBgn0052762.
VDRC has 2 RNAi stocks for FBgn0052762 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 1.20None
Head1 ± 00 of 4 0.50None
Eye1 ± 10 of 4 0.87None
Thoracicoabdominal ganglion0 ± 00 of 4 0.30None
Salivary gland6 ± 20 of 4 2.86None
Crop1 ± 00 of 4 0.60None
Midgut2 ± 10 of 4 1.30None
Tubule1 ± 00 of 4 0.60Down
Hindgut1 ± 00 of 4 0.70None
Heart2 ± 00 of 4 0.95None
Fat body4 ± 20 of 4 2.00None
Ovary0 ± 00 of 4 0.40None
Testis2 ± 00 of 4 0.90None
Male accessory glands1 ± 00 of 4 0.60None
Virgin spermatheca3 ± 00 of 4 1.41None
Mated spermatheca2 ± 10 of 4 1.14None
Adult carcass5 ± 20 of 4 2.60None
Larval CNS0 ± 00 of 4 0.42None
Larval Salivary gland0 ± 00 of 4 0.43None
Larval midgut1 ± 00 of 4 0.52None
Larval tubule2 ± 10 of 4 1.00None
Larval hindgut0 ± 00 of 4 0.40None
Larval fat body56 ± 461 of 426.10None
Larval trachea1 ± 10 of 4 0.84None
Larval carcass0 ± 00 of 4 0.37None
S2 cells (growing)1 ± 00 of 4 0.67None
Whole fly2 ± 00 of 4

Looking for CG32762-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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