FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG32767-RA through 18771 annotations produced 1 hits

(CG32767):

Annotation Number : CG32767
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052767
Gbrowse : chrX:4968671-4975106 (-) // 99.92 //
Probeset : 1627122_at
Accessions : protein= NP_001162674; /// NP_001162675; /// NP_572203; /// NP_996351;, nucleotide= NM_001169203; /// NM_001169204; /// NM_131975; /// NM_206628;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0052767.
BDGP gene expression has embryonic in situ data for CG32767: 4 pix of staining in 1 body parts.
Homophila reports that CG32767 is a close match (1e-11) to human gene HTX;HTX1;ZIC3 (NP_003404), a gene associated with Heterotaxy, X-linked visceral, 306955 (3).
BioGrid reports that CG32767 interacts with CG5717 .
VDRC has 3 RNAi stocks for FBgn0052767 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	222 ± 11	4 of 4	3.20	Up
Head	48 ± 2	4 of 4	0.70	Down
Eye	59 ± 7	4 of 4	0.87	None
Thoracicoabdominal ganglion	121 ± 9	4 of 4	1.80	Up
Salivary gland	37 ± 5	4 of 4	0.54	Down
Crop	100 ± 3	4 of 4	1.50	Up
Midgut	40 ± 1	4 of 4	0.60	Down
Tubule	86 ± 3	4 of 4	1.30	Up
Hindgut	74 ± 1	4 of 4	1.10	None
Heart	56 ± 5	4 of 4	0.82	None
Fat body	94 ± 8	4 of 4	1.37	Up
Ovary	368 ± 7	4 of 4	5.30	Up
Testis	16 ± 2	4 of 4	0.20	Down
Male accessory glands	57 ± 1	4 of 4	0.80	None
Virgin spermatheca	60 ± 3	4 of 4	0.87	None
Mated spermatheca	86 ± 7	4 of 4	1.25	None
Adult carcass	49 ± 3	4 of 4	0.70	Down
Larval CNS	294 ± 34	4 of 4	4.27	Up
Larval Salivary gland	87 ± 7	4 of 4	1.26	None
Larval midgut	42 ± 5	4 of 4	0.61	Down
Larval tubule	94 ± 7	4 of 4	1.40	Up
Larval hindgut	88 ± 4	4 of 4	1.29	Up
Larval fat body	34 ± 2	4 of 4	0.50	Down
Larval trachea	98 ± 2	4 of 4	1.42	Up
Larval carcass	100 ± 5	4 of 4	1.46	Up
S2 cells (growing)	124 ± 5	4 of 4	1.81	Up
Whole fly	69 ± 4	4 of 4

Looking for CG32767-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720