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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3277-RA through 18771 annotations produced 1 hits



(CG3277):

Annotation Number : CG3277
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031518
Gbrowse : chr2L:3313346-3317086 (+) // 100.0 //
Probeset : 1623393_a_at
Accessions : protein= NP_608762;, nucleotide= NM_134918;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0031518.
Homophila reports that CG3277 is a close match (3e-14) to human gene CRAF;NS5;RAF1 (NP_002871), a gene associated with LEOPARD syndrome 2, 611554 (3);Noonan syndrome 5, 611553 (3).
VDRC has 2 RNAi stocks for FBgn0031518 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 14 of 4 1.80Up
Head13 ± 14 of 4 1.20None
Eye7 ± 00 of 4 0.64Down
Thoracicoabdominal ganglion13 ± 13 of 4 1.10None
Salivary gland56 ± 24 of 4 4.74Up
Crop10 ± 01 of 4 0.90None
Midgut151 ± 84 of 412.80Up
Tubule11 ± 02 of 4 1.00None
Hindgut32 ± 04 of 4 2.70Up
Heart4 ± 10 of 4 0.39Down
Fat body4 ± 50 of 4 0.39None
Ovary5 ± 01 of 4 0.40Down
Testis11 ± 14 of 4 1.00None
Male accessory glands9 ± 01 of 4 0.80None
Virgin spermatheca2 ± 10 of 4 0.22Down
Mated spermatheca3 ± 00 of 4 0.29Down
Adult carcass9 ± 30 of 4 0.80None
Larval CNS16 ± 34 of 4 1.35None
Larval Salivary gland8 ± 20 of 4 0.74None
Larval midgut90 ± 34 of 4 7.65Up
Larval tubule23 ± 24 of 4 2.00Up
Larval hindgut25 ± 24 of 4 2.16Up
Larval fat body5 ± 10 of 4 0.50Down
Larval trachea9 ± 10 of 4 0.81Down
Larval carcass15 ± 14 of 4 1.31Up
S2 cells (growing)4 ± 00 of 4 0.39Down
Whole fly11 ± 03 of 4

Looking for CG3277-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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