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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3278-RA through 18771 annotations produced 1 hits

Tif-IA (Tif-IA):

Annotation Number : CG3278
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032988
Gbrowse : chr2L:22249877-22258261 (+) // 100.0 //
Probeset : 1638591_at
Accessions : protein= NP_788084;, nucleotide= NM_176070;
Pathway : 0005736 // DNA-directed RNA polymerase I complex // inferred from sequence or structural similarity
Interpro : 0003701 // RNA polymerase I transcription factor activity // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0032988.
BDGP gene expression has embryonic in situ data for CG3278: 15 pix of staining in 30 body parts.
BioGrid reports that CG3278 interacts with CG7434 CG9465 CG5325 CG5436 CG7109 CG9007 .
TRiP has 1 RNAi stocks for FBgn0032988 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032988 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain423 84 of 4 0.80Down
Head314 164 of 4 0.60Down
Eye228 74 of 4 0.42Down
Thoracicoabdominal ganglion483 164 of 4 0.90None
Salivary gland330 154 of 4 0.61Down
Crop367 144 of 4 0.70Down
Midgut351 84 of 4 0.60Down
Tubule289 254 of 4 0.50Down
Hindgut249 104 of 4 0.50Down
Heart208 34 of 4 0.38Down
Fat body337 154 of 4 0.62Down
Ovary941 54 of 4 1.70Up
Testis438 114 of 4 0.80Down
Male accessory glands621 354 of 4 1.10None
Virgin spermatheca301 104 of 4 0.55Down
Mated spermatheca440 74 of 4 0.81Down
Adult carcass230 84 of 4 0.40Down
Larval CNS626 164 of 4 1.15Up
Larval Salivary gland338 224 of 4 0.62Down
Larval midgut260 164 of 4 0.48Down
Larval tubule209 34 of 4 0.40Down
Larval hindgut307 304 of 4 0.56Down
Larval fat body251 314 of 4 0.50Down
Larval trachea300 324 of 4 0.55Down
Larval carcass432 594 of 4 0.79None
S2 cells (growing)506 74 of 4 0.93None
Whole fly545 234 of 4

Looking for CG3278-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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