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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32797-RA through 18771 annotations produced 2 hits



/// (CG32733 /// CG32797):

Annotation Number : CG32797
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052733 /// FBgn0052797
Gbrowse : chrX:2319129-2319738 (-) // 100.0 //
Probeset : 1638597_s_at
Accessions : protein= NP_726810; /// NP_727143;, nucleotide= NM_166939; /// NM_167099;
FlyMine data for FBgn0052733 /// FBgn0052797.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 13 of 4 2.40Up
Head7 10 of 4 1.20None
Eye3 10 of 4 0.57None
Thoracicoabdominal ganglion9 10 of 4 1.50None
Salivary gland22 10 of 4 3.56Up
Crop7 10 of 4 1.20None
Midgut8 30 of 4 1.30None
Tubule5 00 of 4 0.90None
Hindgut5 20 of 4 0.90None
Heart3 10 of 4 0.61None
Fat body27 81 of 4 4.41Up
Ovary6 00 of 4 1.10None
Testis22 14 of 4 3.70Up
Male accessory glands8 30 of 4 1.30None
Virgin spermatheca26 24 of 4 4.25Up
Mated spermatheca29 63 of 4 4.65Up
Adult carcass11 40 of 4 1.90None
Larval CNS10 32 of 4 1.70None
Larval Salivary gland9 21 of 4 1.56None
Larval midgut7 20 of 4 1.14None
Larval tubule8 10 of 4 1.30None
Larval hindgut8 10 of 4 1.42None
Larval fat body7 11 of 4 1.20None
Larval trachea6 31 of 4 1.02None
Larval carcass11 10 of 4 1.86Up
S2 cells (growing)5 10 of 4 0.82None
Whole fly6 10 of 4



(CG32797):

Annotation Number : CG32797
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052797
Gbrowse : chrX:2319129-2319738 (-) // 100.0 //
Probeset : 1623700_at
Accessions : protein= NP_726810;, nucleotide= NM_166939;
FlyMine data for FBgn0052797.
VDRC has 1 RNAi stocks for FBgn0052797 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 4.50None
Head1 00 of 4 1.90None
Eye2 00 of 4 2.91Up
Thoracicoabdominal ganglion2 10 of 4 2.60None
Salivary gland9 10 of 410.88Up
Crop1 00 of 4 2.30None
Midgut1 00 of 4 1.20None
Tubule1 00 of 4 1.80Up
Hindgut1 00 of 4 1.20None
Heart4 10 of 4 4.97None
Fat body1 00 of 4 2.12None
Ovary0 00 of 4 0.90None
Testis10 14 of 412.10Up
Male accessory glands0 00 of 4 1.10None
Virgin spermatheca4 10 of 4 5.09None
Mated spermatheca6 21 of 4 7.27None
Adult carcass3 20 of 4 3.70None
Larval CNS1 10 of 4 1.94None
Larval Salivary gland2 10 of 4 3.24None
Larval midgut2 10 of 4 2.58None
Larval tubule1 00 of 4 2.10None
Larval hindgut0 00 of 4 0.79None
Larval fat body1 00 of 4 2.30None
Larval trachea2 10 of 4 2.61None
Larval carcass0 00 of 4 0.94None
S2 cells (growing)0 00 of 4 0.97None
Whole fly0 00 of 4

Looking for CG32797-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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