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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32799-RA through 18771 annotations produced 1 hits



msta (msta):

Annotation Number : CG32799
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053548
Gbrowse : chrX:2106878-2107808 (-) // 100.0 //
Probeset : 1632861_at
Accessions : protein= NP_001014717; /// NP_001014718;, nucleotide= NM_001014717; /// NM_001014718;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
Interpro : 0016564 // transcription repressor activity // inferred from direct assay
FlyMine data for FBgn0053548.
VDRC has 1 RNAi stocks for FBgn0053548 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.40Down
Eye1 ± 00 of 4 0.33Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.80None
Salivary gland2 ± 10 of 4 0.76None
Crop83 ± 34 of 425.30Up
Midgut7 ± 10 of 4 2.10None
Tubule3 ± 00 of 4 1.10None
Hindgut22 ± 24 of 4 6.70Up
Heart8 ± 22 of 4 2.61None
Fat body4 ± 20 of 4 1.21None
Ovary0 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.40Down
Male accessory glands7 ± 10 of 4 2.10None
Virgin spermatheca0 ± 00 of 4 0.24Down
Mated spermatheca1 ± 00 of 4 0.29Down
Adult carcass4 ± 10 of 4 1.20None
Larval CNS0 ± 00 of 4 0.16Down
Larval Salivary gland2 ± 10 of 4 0.72None
Larval midgut4 ± 11 of 4 1.30None
Larval tubule4 ± 00 of 4 1.30None
Larval hindgut42 ± 44 of 412.74Up
Larval fat body1 ± 00 of 4 0.40Down
Larval trachea2 ± 20 of 4 0.79None
Larval carcass21 ± 52 of 4 6.66Up
S2 cells (growing)2 ± 10 of 4 0.75None
Whole fly3 ± 00 of 4

Looking for CG32799-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime