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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32825-RA through 18771 annotations produced 1 hits



Odorant receptor 19a /// Odorant receptor 19b (Or19a /// Or19b):

Annotation Number : CG32825
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041626 /// FBgn0062565
Gbrowse : chrX:19988430-19989800 (+) // 100.0 // /// chrX:20035851-20037221 (-) // 99.48 //
Probeset : 1623529_s_at
Accessions : protein= NP_525013; /// NP_728315;, nucleotide= NM_080274; /// NM_167690;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0041626 /// FBgn0062565.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.90None
Head9 ± 10 of 4 2.60Up
Eye6 ± 10 of 4 1.73None
Thoracicoabdominal ganglion2 ± 10 of 4 0.70None
Salivary gland9 ± 50 of 4 2.54None
Crop7 ± 10 of 4 2.10None
Midgut11 ± 10 of 4 3.20Up
Tubule2 ± 00 of 4 0.60Down
Hindgut5 ± 20 of 4 1.60None
Heart3 ± 10 of 4 0.98None
Fat body5 ± 20 of 4 1.49None
Ovary3 ± 10 of 4 1.00None
Testis3 ± 10 of 4 0.90None
Male accessory glands4 ± 20 of 4 1.30None
Virgin spermatheca9 ± 20 of 4 2.62None
Mated spermatheca6 ± 10 of 4 1.82None
Adult carcass7 ± 30 of 4 2.00None
Larval CNS3 ± 10 of 4 0.83None
Larval Salivary gland10 ± 11 of 4 2.84Up
Larval midgut5 ± 20 of 4 1.38None
Larval tubule2 ± 00 of 4 0.70None
Larval hindgut6 ± 10 of 4 1.71None
Larval fat body4 ± 10 of 4 1.30None
Larval trachea1 ± 10 of 4 0.53None
Larval carcass3 ± 10 of 4 1.07None
S2 cells (growing)246 ± 104 of 467.94Up
Whole fly3 ± 00 of 4

Looking for CG32825-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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