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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG32832-RA through 18771 annotations produced 1 hits


(CG32832):

Annotation Number : CG32832
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052832
Gbrowse : chr2L:16878600-16879275 (-) // 100.0 //
Probeset : 1629303_at
Accessions : protein= NP_724026;, nucleotide= NM_165200;
FlyMine data for FBgn0052832.
VDRC has 3 RNAi stocks for FBgn0052832 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.00Down
Salivary gland11 ± 40 of 4 0.11Down
Crop3 ± 10 of 4 0.00Down
Midgut9 ± 00 of 4 0.10Down
Tubule15 ± 11 of 4 0.10Down
Hindgut3 ± 10 of 4 0.00Down
Heart4 ± 20 of 4 0.04Down
Fat body4 ± 20 of 4 0.05Down
Ovary1 ± 00 of 4 0.00Down
Testis1145 ± 344 of 411.10Up
Male accessory glands9 ± 10 of 4 0.10Down
Virgin spermatheca8 ± 10 of 4 0.08Down
Mated spermatheca5 ± 00 of 4 0.06Down
Adult carcass4 ± 10 of 4 0.00Down
Larval CNS3 ± 20 of 4 0.03Down
Larval Salivary gland6 ± 10 of 4 0.06Down
Larval midgut7 ± 11 of 4 0.07Down
Larval tubule7 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.03Down
Larval fat body71 ± 293 of 4 0.70None
Larval trachea8 ± 91 of 4 0.09Down
Larval carcass4 ± 10 of 4 0.04Down
S2 cells (growing)4 ± 10 of 4 0.04Down
Whole fly103 ± 34 of 4

Looking for CG32832-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime