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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32853-RB through 18771 annotations produced 2 hits



Mth-like 12 (mthl12):

Annotation Number : CG32853
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045442
Gbrowse : chr3R:9179394-9180580 (+) // 100.0 //
Probeset : 1625015_at
Accessions : protein= NP_731791;, nucleotide= NM_169508;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0045442.
VDRC has 2 RNAi stocks for FBgn0045442 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.70None
Head0 00 of 4 0.30None
Eye0 00 of 4 0.28None
Thoracicoabdominal ganglion3 00 of 4 1.30None
Salivary gland11 40 of 4 4.00None
Crop4 00 of 4 1.60None
Midgut4 10 of 4 1.50None
Tubule2 00 of 4 0.80None
Hindgut1 00 of 4 0.40None
Heart1 00 of 4 0.37None
Fat body4 00 of 4 1.71None
Ovary1 00 of 4 0.60None
Testis2 00 of 4 1.00None
Male accessory glands5 10 of 4 1.90None
Virgin spermatheca1 11 of 4 0.64None
Mated spermatheca2 00 of 4 0.83None
Adult carcass5 10 of 4 2.00None
Larval CNS1 00 of 4 0.63None
Larval Salivary gland3 10 of 4 1.08None
Larval midgut3 12 of 4 1.29None
Larval tubule0 00 of 4 0.30None
Larval hindgut2 11 of 4 0.89None
Larval fat body5 10 of 4 1.90None
Larval trachea1 00 of 4 0.50None
Larval carcass0 00 of 4 0.34None
S2 cells (growing)3 10 of 4 1.08None
Whole fly2 11 of 4



Mth-like 12 (mthl12):

Annotation Number : CG32853
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045442
Gbrowse : chr3R:9179394-9180580 (+) // 100.0 //
Probeset : 1623127_a_at
Accessions : protein= NP_731791;, nucleotide= NM_169508;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0045442.
VDRC has 2 RNAi stocks for FBgn0045442 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.10None
Head0 00 of 4 0.90None
Eye0 00 of 4 0.72None
Thoracicoabdominal ganglion0 00 of 4 0.60None
Salivary gland4 20 of 4 4.83None
Crop0 00 of 4 0.40None
Midgut1 00 of 4 1.40None
Tubule1 00 of 4 1.20None
Hindgut0 00 of 4 0.30None
Heart0 00 of 4 0.50None
Fat body0 00 of 4 0.58None
Ovary0 00 of 4 0.80None
Testis0 00 of 4 0.40None
Male accessory glands0 00 of 4 0.80None
Virgin spermatheca1 00 of 4 1.28None
Mated spermatheca1 00 of 4 1.78None
Adult carcass1 00 of 4 1.90None
Larval CNS0 00 of 4 0.50None
Larval Salivary gland1 00 of 4 1.28None
Larval midgut0 00 of 4 0.44None
Larval tubule3 00 of 4 3.50Up
Larval hindgut0 00 of 4 0.81None
Larval fat body1 10 of 4 2.10None
Larval trachea1 10 of 4 1.69None
Larval carcass0 00 of 4 0.47None
S2 cells (growing)0 00 of 4 0.28None
Whole fly0 00 of 4

Looking for CG32853-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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