FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG32854-RA through 18771 annotations produced 1 hits

mitochondrial ribosomal protein S21 (mRpS21):

Annotation Number : CG32854
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0044511
Gbrowse : chr3R:9207050-9207514 (-) // 100.0 //
Probeset : 1631434_at
Accessions : protein= NP_731803;, nucleotide= NM_169518;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0044511.
VDRC has 3 RNAi stocks for FBgn0044511 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	435 ± 7	4 of 4	0.90	None
Head	537 ± 23	4 of 4	1.10	None
Eye	534 ± 28	4 of 4	1.06	None
Thoracicoabdominal ganglion	522 ± 21	4 of 4	1.00	None
Salivary gland	521 ± 16	4 of 4	1.03	None
Crop	402 ± 13	4 of 4	0.80	None
Midgut	410 ± 17	4 of 4	0.80	None
Tubule	235 ± 7	4 of 4	0.50	Down
Hindgut	467 ± 13	4 of 4	0.90	None
Heart	460 ± 16	4 of 4	0.91	None
Fat body	499 ± 40	4 of 4	0.99	None
Ovary	644 ± 11	4 of 4	1.30	None
Testis	335 ± 7	4 of 4	0.70	None
Male accessory glands	599 ± 22	4 of 4	1.20	None
Virgin spermatheca	445 ± 22	4 of 4	0.88	None
Mated spermatheca	494 ± 48	4 of 4	0.98	None
Adult carcass	427 ± 32	4 of 4	0.80	None
Larval CNS	552 ± 13	4 of 4	1.09	None
Larval Salivary gland	539 ± 16	4 of 4	1.07	None
Larval midgut	245 ± 2	4 of 4	0.49	Down
Larval tubule	270 ± 10	4 of 4	0.50	Down
Larval hindgut	386 ± 21	4 of 4	0.76	None
Larval fat body	238 ± 11	4 of 4	0.50	Down
Larval trachea	476 ± 37	4 of 4	0.94	None
Larval carcass	416 ± 43	4 of 4	0.82	None
S2 cells (growing)	356 ± 8	4 of 4	0.70	None
Whole fly	505 ± 56	4 of 4

Looking for CG32854-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720