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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32859-RA through 18771 annotations produced 1 hits



eIF4E-7 (eIF4E-7):

Annotation Number : CG32859
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040368
Gbrowse : chrX:1052659-1056423 (-) // 100.0 //
Probeset : 1623501_at
Accessions : protein= NP_726718;, nucleotide= NM_166870;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0016281 // eukaryotic translation initiation factor 4F c
Interpro : 0000339 // RNA cap binding // inferred from sequence or structural similarity /// 0000339 // RNA cap binding // non-trac
FlyMine data for FBgn0040368.
BioGrid reports that CG32859 interacts with CG5732 CG6304 CG8846 CG9775 .
VDRC has 4 RNAi stocks for FBgn0040368 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.04Down
Crop0 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule0 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body5 ± 40 of 4 0.09Down
Ovary0 ± 00 of 4 0.00Down
Testis716 ± 154 of 413.50Up
Male accessory glands2 ± 10 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.02Down
Mated spermatheca0 ± 00 of 4 0.02Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 10 of 4 0.04Down
Larval midgut2 ± 10 of 4 0.04Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.02Down
Larval fat body76 ± 443 of 4 1.40None
Larval trachea2 ± 20 of 4 0.04Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly53 ± 34 of 4

Looking for CG32859-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime