FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3291-RA through 18771 annotations produced 1 hits

Pacman (pcm):

Annotation Number : CG3291
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020261
Gbrowse : chrX:19379779-19385984 (-) // 100.0 //
Probeset : 1624778_at
Accessions : protein= NP_001162796; /// NP_523408;, nucleotide= NM_001169325; /// NM_078684;
Pathway : nonsense-mediated decay // inferred from mutant phenotype /// 0006139 // nucleobase
Interpro : nucleoside
FlyMine data for FBgn0020261.
TRiP has 2 RNAi stocks for FBgn0020261 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020261 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	186 ± 12	4 of 4	1.10	None
Head	84 ± 2	4 of 4	0.50	Down
Eye	65 ± 1	4 of 4	0.38	Down
Thoracicoabdominal ganglion	117 ± 7	4 of 4	0.70	None
Salivary gland	99 ± 4	4 of 4	0.58	Down
Crop	79 ± 3	4 of 4	0.50	Down
Midgut	84 ± 4	4 of 4	0.50	Down
Tubule	99 ± 4	4 of 4	0.60	Down
Hindgut	71 ± 2	4 of 4	0.40	Down
Heart	62 ± 6	4 of 4	0.36	Down
Fat body	111 ± 8	4 of 4	0.65	None
Ovary	345 ± 8	4 of 4	2.00	Up
Testis	214 ± 11	4 of 4	1.20	None
Male accessory glands	102 ± 3	4 of 4	0.60	None
Virgin spermatheca	87 ± 8	4 of 4	0.51	Down
Mated spermatheca	104 ± 4	4 of 4	0.61	None
Adult carcass	82 ± 4	4 of 4	0.50	Down
Larval CNS	337 ± 20	4 of 4	1.96	Up
Larval Salivary gland	195 ± 13	4 of 4	1.14	None
Larval midgut	105 ± 4	4 of 4	0.61	None
Larval tubule	118 ± 9	4 of 4	0.70	None
Larval hindgut	137 ± 5	4 of 4	0.80	None
Larval fat body	151 ± 5	4 of 4	0.90	None
Larval trachea	155 ± 8	4 of 4	0.91	None
Larval carcass	189 ± 5	4 of 4	1.10	None
S2 cells (growing)	171 ± 9	4 of 4	1.00	None
Whole fly	171 ± 22	4 of 4

Looking for CG3291-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720