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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3292-RA through 18771 annotations produced 1 hits



(CG3292):

Annotation Number : CG3292
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034710
Gbrowse : chr2R:18091198-18093081 (-) // 100.0 //
Probeset : 1625739_at
Accessions : protein= NP_611653;, nucleotide= NM_137809;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004035 // alkaline phosphatase activity // inf
FlyMine data for FBgn0034710.
Homophila reports that CG3292 is a close match (2e-86) to human gene (NP_001623), a gene associated with .
VDRC has 1 RNAi stocks for FBgn0034710 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 10 of 4 0.20Down
Head2 10 of 4 0.30None
Eye2 10 of 4 0.25Down
Thoracicoabdominal ganglion4 10 of 4 0.60None
Salivary gland7 30 of 4 0.92None
Crop5 10 of 4 0.60None
Midgut5 10 of 4 0.70None
Tubule132 144 of 415.90Up
Hindgut7 10 of 4 0.90None
Heart2 10 of 4 0.30Down
Fat body206 4071 of 424.79None
Ovary3 00 of 4 0.40Down
Testis3 00 of 4 0.40Down
Male accessory glands2 00 of 4 0.20Down
Virgin spermatheca3 00 of 4 0.36Down
Mated spermatheca4 10 of 4 0.54None
Adult carcass3 20 of 4 0.50None
Larval CNS4 10 of 4 0.53None
Larval Salivary gland9 20 of 4 1.09None
Larval midgut3 00 of 4 0.40Down
Larval tubule5637 1224 of 4677.20Up
Larval hindgut19 91 of 4 2.29None
Larval fat body1 00 of 4 0.20Down
Larval trachea4 20 of 4 0.59None
Larval carcass6 20 of 4 0.82None
S2 cells (growing)5 10 of 4 0.69None
Whole fly8 10 of 4

Looking for CG3292-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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