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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3295-RA through 18771 annotations produced 1 hits



(CG3295):

Annotation Number : CG3295
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034573
Gbrowse : chr2R:16903091-16904951 (-) // 100.0 //
Probeset : 1627592_at
Accessions : protein= NP_611536;, nucleotide= NM_137692;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034573.
BDGP gene expression has embryonic in situ data for CG3295: 4 pix of staining in 1 body parts.
BioGrid reports that CG3295 interacts with CG6617 CG3295 CG5670 CG5708 CG6743 CG9426 .
VDRC has 1 RNAi stocks for FBgn0034573 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain132 34 of 4 1.30None
Head125 94 of 4 1.20None
Eye135 74 of 4 1.32Up
Thoracicoabdominal ganglion117 44 of 4 1.10None
Salivary gland191 104 of 4 1.86Up
Crop131 44 of 4 1.30Up
Midgut160 04 of 4 1.60Up
Tubule210 74 of 4 2.00Up
Hindgut175 44 of 4 1.70Up
Heart118 64 of 4 1.15None
Fat body123 134 of 4 1.20None
Ovary116 54 of 4 1.10None
Testis48 14 of 4 0.50Down
Male accessory glands191 104 of 4 1.90Up
Virgin spermatheca127 64 of 4 1.24None
Mated spermatheca103 34 of 4 1.01None
Adult carcass136 74 of 4 1.30Up
Larval CNS104 124 of 4 1.02None
Larval Salivary gland114 14 of 4 1.11None
Larval midgut300 374 of 4 2.93Up
Larval tubule470 64 of 4 4.60Up
Larval hindgut216 244 of 4 2.11Up
Larval fat body122 94 of 4 1.20None
Larval trachea112 94 of 4 1.10None
Larval carcass187 404 of 4 1.82None
S2 cells (growing)176 24 of 4 1.72Up
Whole fly102 84 of 4

Looking for CG3295-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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