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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32975-RA through 18771 annotations produced 1 hits



Dalpha5 (nAcRalpha-34E):

Annotation Number : CG32975
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028875
Gbrowse : chr2L:14061247-14089260 (+) // 100.0 //
Probeset : 1641662_at
Accessions : protein= NP_788049; /// NP_995707; /// NP_995708;, nucleotide= NM_176035; /// NM_205985; /// NM_205986;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cat
FlyMine data for FBgn0028875.
Homophila reports that CG32975 is a close match (8e-11) to human gene GABRA2 (NP_000798), a gene associated with {Alcoholism, susceptibility to}, 103780 (3).
TRiP has 1 RNAi stocks for FBgn0028875 available for purchase.
VDRC has 5 RNAi stocks for FBgn0028875 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain320 144 of 418.70Up
Head44 24 of 4 2.60Up
Eye10 13 of 4 0.61Down
Thoracicoabdominal ganglion210 244 of 412.30Up
Salivary gland33 71 of 4 1.94None
Crop8 10 of 4 0.50Down
Midgut14 10 of 4 0.80None
Tubule10 10 of 4 0.60Down
Hindgut16 10 of 4 0.90None
Heart5 10 of 4 0.32Down
Fat body26 80 of 4 1.55None
Ovary4 10 of 4 0.30Down
Testis3 10 of 4 0.20Down
Male accessory glands7 40 of 4 0.50None
Virgin spermatheca13 10 of 4 0.79None
Mated spermatheca19 30 of 4 1.12None
Adult carcass19 30 of 4 1.10None
Larval CNS104 114 of 4 6.12Up
Larval Salivary gland11 23 of 4 0.69None
Larval midgut10 50 of 4 0.60None
Larval tubule16 20 of 4 1.00None
Larval hindgut11 00 of 4 0.67Down
Larval fat body8 20 of 4 0.50Down
Larval trachea5 10 of 4 0.33Down
Larval carcass8 30 of 4 0.52None
S2 cells (growing)12 12 of 4 0.72Down
Whole fly17 10 of 4

Looking for CG32975-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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