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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32984-RA through 18771 annotations produced 1 hits



(CG32984):

Annotation Number : CG32984
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052984
Gbrowse : chr2L:8965133-8967028 (+) // 100.0 //
Probeset : 1636449_at
Accessions : protein= NP_788014;, nucleotide= NM_176000;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0052984.
VDRC has 2 RNAi stocks for FBgn0052984 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head1 00 of 4 0.00Down
Eye2 10 of 4 0.05Down
Thoracicoabdominal ganglion14 62 of 4 0.30Down
Salivary gland8765 4244 of 4195.23Up
Crop420 854 of 4 9.40Up
Midgut5 10 of 4 0.10Down
Tubule3 10 of 4 0.10Down
Hindgut2 10 of 4 0.10Down
Heart0 00 of 4 0.01Down
Fat body1 00 of 4 0.04Down
Ovary1 00 of 4 0.00Down
Testis3 01 of 4 0.10Down
Male accessory glands18 13 of 4 0.40Down
Virgin spermatheca0 00 of 4 0.02Down
Mated spermatheca2 00 of 4 0.05Down
Adult carcass73 114 of 4 1.60None
Larval CNS2 10 of 4 0.06Down
Larval Salivary gland4 10 of 4 0.09Down
Larval midgut5 00 of 4 0.12Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut1 00 of 4 0.04Down
Larval fat body3 10 of 4 0.10Down
Larval trachea0 00 of 4 0.02Down
Larval carcass0 00 of 4 0.01Down
S2 cells (growing)28 14 of 4 0.64None
Whole fly44 54 of 4

Looking for CG32984-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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