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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3301-RA through 18771 annotations produced 2 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:17100827-17101973 (-) // 100.0 //):

Annotation Number : CG3301
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1628931_at
Accessions : protein= EC:1.1.1.-, nucleotide=
Interpro : 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from
BioGrid reports that CG3301 interacts with CG3301 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 13 of 4 0.30Down
Head175 ± 234 of 4 4.80Up
Eye70 ± 24 of 4 1.96Up
Thoracicoabdominal ganglion9 ± 03 of 4 0.30Down
Salivary gland5 ± 10 of 4 0.14Down
Crop120 ± 44 of 4 3.30Up
Midgut197 ± 154 of 4 5.50Up
Tubule2 ± 00 of 4 0.10Down
Hindgut32 ± 14 of 4 0.90None
Heart67 ± 64 of 4 1.86Up
Fat body126 ± 134 of 4 3.50Up
Ovary1 ± 00 of 4 0.00Down
Testis81 ± 44 of 4 2.30Up
Male accessory glands2 ± 10 of 4 0.10Down
Virgin spermatheca51 ± 54 of 4 1.43None
Mated spermatheca56 ± 44 of 4 1.56Up
Adult carcass110 ± 154 of 4 3.00Up
Larval CNS18 ± 34 of 4 0.51Down
Larval Salivary gland291 ± 324 of 4 8.05Up
Larval midgut29 ± 14 of 4 0.81None
Larval tubule5 ± 10 of 4 0.20Down
Larval hindgut32 ± 34 of 4 0.89None
Larval fat body102 ± 174 of 4 2.80Up
Larval trachea3 ± 11 of 4 0.08Down
Larval carcass21 ± 44 of 4 0.59Down
S2 cells (growing)3 ± 10 of 4 0.10Down
Whole fly36 ± 34 of 4



March 2006 (FlyBase/BDGP 5.3) (chr3R:17100827-17101973 (-) // 100.0 //):

Annotation Number : CG3301
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1627117_a_at
Accessions : protein= EC:1.1.1.-, nucleotide=
Interpro : 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from
BioGrid reports that CG3301 interacts with CG3301 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 04 of 4 0.20Down
Head332 ± 134 of 4 4.60Up
Eye295 ± 94 of 4 4.09Up
Thoracicoabdominal ganglion19 ± 14 of 4 0.30Down
Salivary gland5 ± 20 of 4 0.08Down
Crop397 ± 94 of 4 5.50Up
Midgut249 ± 114 of 4 3.40Up
Tubule7 ± 00 of 4 0.10Down
Hindgut62 ± 64 of 4 0.90None
Heart239 ± 174 of 4 3.32Up
Fat body141 ± 224 of 4 1.96Up
Ovary1 ± 00 of 4 0.00Down
Testis119 ± 54 of 4 1.60Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca57 ± 54 of 4 0.79None
Mated spermatheca60 ± 54 of 4 0.84None
Adult carcass315 ± 114 of 4 4.40Up
Larval CNS27 ± 84 of 4 0.38Down
Larval Salivary gland277 ± 294 of 4 3.84Up
Larval midgut76 ± 104 of 4 1.06None
Larval tubule10 ± 20 of 4 0.10Down
Larval hindgut76 ± 34 of 4 1.06None
Larval fat body113 ± 114 of 4 1.60Up
Larval trachea27 ± 174 of 4 0.38Down
Larval carcass183 ± 274 of 4 2.54Up
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly72 ± 54 of 4

Looking for CG3301-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime