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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33041-RA through 18771 annotations produced 1 hits



CG33041 (CG12484):

Annotation Number : CG33041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086604
Gbrowse : chr2R:16311839-16358469 (+) // 100.0 //
Probeset : 1628664_at
Accessions : protein= NP_001097382; /// NP_001097383; /// NP_001137720; /// NP_725963;, nucleotide= NM_001103912; /// NM_001103913; /// NM_001144248; /// NM_166392;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
FlyMine data for FBgn0086604.
Homophila reports that CG33041 is a close match (4e-13) to human gene NPHN;NPHS1 (NP_004637), a gene associated with Nephrosis-1, congenital, Finnish type, 256300 (3).
VDRC has 2 RNAi stocks for FBgn0086604 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain165 64 of 437.10Up
Head48 24 of 410.90Up
Eye13 14 of 4 3.11Up
Thoracicoabdominal ganglion150 14 of 433.80Up
Salivary gland8 20 of 4 1.97None
Crop9 00 of 4 2.10Up
Midgut1 00 of 4 0.30None
Tubule3 00 of 4 0.80Down
Hindgut1 00 of 4 0.40None
Heart4 11 of 4 0.96None
Fat body3 10 of 4 0.75None
Ovary0 00 of 4 0.10None
Testis0 00 of 4 0.20None
Male accessory glands1 00 of 4 0.40None
Virgin spermatheca3 10 of 4 0.82None
Mated spermatheca3 00 of 4 0.87None
Adult carcass9 20 of 4 2.10None
Larval CNS38 44 of 4 8.67Up
Larval Salivary gland2 00 of 4 0.56None
Larval midgut1 00 of 4 0.21None
Larval tubule0 00 of 4 0.10None
Larval hindgut3 00 of 4 0.85None
Larval fat body2 00 of 4 0.50None
Larval trachea2 20 of 4 0.54None
Larval carcass2 00 of 4 0.46None
S2 cells (growing)1 00 of 4 0.31None
Whole fly4 11 of 4

Looking for CG33041-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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