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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33047-RA through 18771 annotations produced 1 hits



/// alpha-L-fucosidase (CG11714 /// Fuca):

Annotation Number : CG33047
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036169 /// FBgn0036170
Gbrowse : chr3L:11511896-11515813 (-) // 100.0 //
Probeset : 1635028_s_at
Accessions : protein= NP_001027123; /// NP_001027124; /// NP_648472;, nucleotide= NM_001031952; /// NM_001031953; /// NM_140215;
Pathway : 0005737 // cytoplasm // inferred by curator
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004560 // alpha-L-fucosidase activity // infe
FlyMine data for FBgn0036169 /// FBgn0036170.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain60 ± 04 of 4 3.50Up
Head56 ± 54 of 4 3.30Up
Eye62 ± 104 of 4 3.63Up
Thoracicoabdominal ganglion70 ± 34 of 4 4.10Up
Salivary gland17 ± 61 of 4 1.01None
Crop9 ± 20 of 4 0.50None
Midgut12 ± 20 of 4 0.70None
Tubule16 ± 21 of 4 1.00None
Hindgut26 ± 24 of 4 1.60Up
Heart2733 ± 1454 of 4159.38Up
Fat body65 ± 374 of 4 3.82None
Ovary6 ± 02 of 4 0.40Down
Testis17 ± 24 of 4 1.00None
Male accessory glands6 ± 20 of 4 0.40Down
Virgin spermatheca7 ± 10 of 4 0.41Down
Mated spermatheca5 ± 30 of 4 0.33Down
Adult carcass127 ± 34 of 4 7.40Up
Larval CNS150 ± 134 of 4 8.75Up
Larval Salivary gland27 ± 14 of 4 1.62Up
Larval midgut24 ± 44 of 4 1.43None
Larval tubule64 ± 34 of 4 3.80Up
Larval hindgut14 ± 12 of 4 0.85None
Larval fat body356 ± 254 of 420.80Up
Larval trachea235 ± 214 of 413.75Up
Larval carcass40 ± 34 of 4 2.37Up
S2 cells (growing)82 ± 34 of 4 4.79Up
Whole fly17 ± 14 of 4

Looking for CG33047-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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