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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33056-RA through 18771 annotations produced 1 hits



(CG33056):

Annotation Number : CG33056
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053056
Gbrowse : chr3L:21191355-21196332 (-) // 100.0 //
Probeset : 1636574_s_at
Accessions : protein= NP_788555; /// NP_788556; /// NP_788557; /// NP_788558; /// NP_788559;, nucleotide= NM_176377; /// NM_176378; /// NM_176379; /// NM_176380; /// NM_176381;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0053056.
BDGP gene expression has embryonic in situ data for CG33056: 12 pix of staining in 5 body parts.
BioGrid reports that CG33056 interacts with CG5555 .
VDRC has 3 RNAi stocks for FBgn0053056 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain93 ± 44 of 4 0.70Down
Head215 ± 64 of 4 1.50Up
Eye330 ± 144 of 4 2.33Up
Thoracicoabdominal ganglion154 ± 54 of 4 1.10None
Salivary gland218 ± 74 of 4 1.54Up
Crop824 ± 374 of 4 5.80Up
Midgut99 ± 54 of 4 0.70Down
Tubule71 ± 54 of 4 0.50Down
Hindgut455 ± 64 of 4 3.20Up
Heart333 ± 314 of 4 2.36Up
Fat body548 ± 524 of 4 3.88Up
Ovary83 ± 54 of 4 0.60Down
Testis17 ± 14 of 4 0.10Down
Male accessory glands38 ± 04 of 4 0.30Down
Virgin spermatheca804 ± 244 of 4 5.68Up
Mated spermatheca503 ± 444 of 4 3.56Up
Adult carcass615 ± 254 of 4 4.30Up
Larval CNS98 ± 104 of 4 0.69Down
Larval Salivary gland44 ± 14 of 4 0.31Down
Larval midgut81 ± 74 of 4 0.58Down
Larval tubule71 ± 34 of 4 0.50Down
Larval hindgut84 ± 24 of 4 0.60Down
Larval fat body86 ± 64 of 4 0.60Down
Larval trachea108 ± 134 of 4 0.77Down
Larval carcass220 ± 114 of 4 1.56Up
S2 cells (growing)209 ± 84 of 4 1.48Up
Whole fly141 ± 54 of 4

Looking for CG33056-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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