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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3306-RA through 18771 annotations produced 1 hits


(CG3306):

Annotation Number : CG3306
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036016
Gbrowse : chr3L:9594622-9595648 (+) // 100.0 //
Probeset : 1635055_at
Accessions : protein= NP_648335;, nucleotide= NM_140078;
FlyMine data for FBgn0036016.
BDGP gene expression has embryonic in situ data for CG3306: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0036016 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head15 ± 42 of 4 0.30Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.04Down
Crop0 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.02Down
Fat body0 ± 00 of 4 0.01Down
Ovary0 ± 00 of 4 0.00Down
Testis646 ± 264 of 412.90Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca0 ± 00 of 4 0.01Down
Mated spermatheca0 ± 00 of 4 0.01Down
Adult carcass0 ± 00 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland0 ± 00 of 4 0.02Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body48 ± 213 of 4 1.00None
Larval trachea4 ± 40 of 4 0.08Down
Larval carcass0 ± 00 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly50 ± 44 of 4

Looking for CG3306-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime