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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33061-RA through 18771 annotations produced 1 hits



(CG33061):

Annotation Number : CG33061
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053061
Gbrowse : chr3L:16322957-16323641 (+) // 100.0 //
Probeset : 1630689_at
Accessions : protein= NP_001097620;, nucleotide= NM_001104150;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005261 // cation channel activity // inferred from electronic annotation
FlyMine data for FBgn0053061.
VDRC has 3 RNAi stocks for FBgn0053061 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.20Down
Head2 ± 10 of 4 0.10Down
Eye5 ± 21 of 4 0.25Down
Thoracicoabdominal ganglion2 ± 11 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.39Down
Crop3 ± 00 of 4 0.20Down
Midgut6 ± 00 of 4 0.30Down
Tubule3 ± 00 of 4 0.20Down
Hindgut5 ± 21 of 4 0.30Down
Heart3 ± 11 of 4 0.19Down
Fat body6 ± 10 of 4 0.34Down
Ovary2 ± 00 of 4 0.10Down
Testis157 ± 64 of 4 7.70Up
Male accessory glands5 ± 10 of 4 0.30Down
Virgin spermatheca8 ± 02 of 4 0.43Down
Mated spermatheca4 ± 10 of 4 0.24Down
Adult carcass5 ± 20 of 4 0.30Down
Larval CNS3 ± 01 of 4 0.18Down
Larval Salivary gland7 ± 11 of 4 0.36Down
Larval midgut5 ± 10 of 4 0.27Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut8 ± 12 of 4 0.39Down
Larval fat body35 ± 182 of 4 1.70None
Larval trachea4 ± 12 of 4 0.20Down
Larval carcass3 ± 00 of 4 0.16Down
S2 cells (growing)4 ± 00 of 4 0.23Down
Whole fly20 ± 14 of 4

Looking for CG33061-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime