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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33067-RC through 18771 annotations produced 1 hits



mei-217 /// transcript c (mei-217 /// mei-218):

Annotation Number : CG33067
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002709 /// FBgn0028581
Gbrowse : chrX:17030982-17037029 (-) // 100.0 //
Probeset : 1626387_s_at
Accessions : protein= NP_001027068; /// NP_001027069; /// NP_001138215; /// NP_728052;, nucleotide= NM_001031897; /// NM_001031898; /// NM_001144743; /// NM_167557;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0004180 // carboxypeptidase activity // inferred from
FlyMine data for FBgn0002709 /// FBgn0028581.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 0.10Down
Head3 10 of 4 0.10Down
Eye1 10 of 4 0.04Down
Thoracicoabdominal ganglion7 21 of 4 0.20Down
Salivary gland4 20 of 4 0.11Down
Crop13 14 of 4 0.30Down
Midgut11 20 of 4 0.30Down
Tubule3 00 of 4 0.10Down
Hindgut7 03 of 4 0.20Down
Heart4 21 of 4 0.10Down
Fat body6 31 of 4 0.15Down
Ovary64 24 of 4 1.50Up
Testis301 74 of 4 7.00Up
Male accessory glands10 10 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.04Down
Mated spermatheca4 11 of 4 0.10Down
Adult carcass12 21 of 4 0.30Down
Larval CNS18 34 of 4 0.43Down
Larval Salivary gland3 10 of 4 0.07Down
Larval midgut6 00 of 4 0.14Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut5 00 of 4 0.13Down
Larval fat body53 274 of 4 1.20None
Larval trachea5 02 of 4 0.13Down
Larval carcass5 01 of 4 0.13Down
S2 cells (growing)58 14 of 4 1.37Up
Whole fly42 34 of 4

Looking for CG33067-RC. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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