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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33092-RA through 18771 annotations produced 1 hits



(CG33092):

Annotation Number : CG33092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053092
Gbrowse : chr3R:17703657-17706418 (+) // 100.0 //
Probeset : 1633497_s_at
Accessions : protein= NP_788705; /// NP_788706; /// NP_788707; /// NP_788709; /// NP_788710; /// NP_788711;, nucleotide= NM_176528; /// NM_176529; /// NM_176530; /// NM_176532; /// NM_176533; /// NM_176534;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity
Interpro : 0003842 // 1-pyrroline-5-carboxylate dehydrogenase activity // inferred from sequence or structural similarity /// 00038
FlyMine data for FBgn0053092.
Homophila reports that CG33092 is a close match (1e-12) to human gene ALDH5A1;SSADH (NP_001071), a gene associated with Succinic semialdehyde dehydrogenase deficiency, 271980 (3).
VDRC has 2 RNAi stocks for FBgn0053092 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head7 20 of 4 0.10Down
Eye3 00 of 4 0.02Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland18 10 of 4 0.14Down
Crop9 10 of 4 0.10Down
Midgut19 14 of 4 0.20Down
Tubule15 03 of 4 0.10Down
Hindgut8 10 of 4 0.10Down
Heart3 10 of 4 0.03Down
Fat body8 30 of 4 0.07Down
Ovary4 10 of 4 0.00Down
Testis1405 324 of 411.00Up
Male accessory glands12 40 of 4 0.10Down
Virgin spermatheca9 11 of 4 0.08Down
Mated spermatheca10 12 of 4 0.09Down
Adult carcass8 20 of 4 0.10Down
Larval CNS2 10 of 4 0.02Down
Larval Salivary gland8 10 of 4 0.06Down
Larval midgut21 24 of 4 0.17Down
Larval tubule14 04 of 4 0.10Down
Larval hindgut6 10 of 4 0.05Down
Larval fat body114 594 of 4 0.90None
Larval trachea5 31 of 4 0.04Down
Larval carcass7 10 of 4 0.06Down
S2 cells (growing)5 00 of 4 0.04Down
Whole fly127 84 of 4

Looking for CG33092-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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