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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33096-RA through 18771 annotations produced 1 hits



(CG33096):

Annotation Number : CG33096
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053096
Gbrowse : chr3R:20923363-20925087 (+) // 100.0 //
Probeset : 1639117_a_at
Accessions : protein= NP_001163719; /// NP_788736; /// NP_788737;, nucleotide= NM_001170248; /// NM_176559; /// NM_176560;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0053096.
BioGrid reports that CG33096 interacts with CG9448 .
VDRC has 3 RNAi stocks for FBgn0053096 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 ± 14 of 4 0.40Down
Head20 ± 33 of 4 0.20Down
Eye28 ± 14 of 4 0.33Down
Thoracicoabdominal ganglion15 ± 33 of 4 0.20Down
Salivary gland21 ± 42 of 4 0.26Down
Crop26 ± 34 of 4 0.30Down
Midgut28 ± 23 of 4 0.30Down
Tubule11 ± 00 of 4 0.10Down
Hindgut19 ± 34 of 4 0.20Down
Heart13 ± 14 of 4 0.16Down
Fat body12 ± 40 of 4 0.14Down
Ovary164 ± 54 of 4 1.90Up
Testis37 ± 24 of 4 0.40Down
Male accessory glands16 ± 12 of 4 0.20Down
Virgin spermatheca5 ± 10 of 4 0.06Down
Mated spermatheca3 ± 10 of 4 0.04Down
Adult carcass12 ± 11 of 4 0.10Down
Larval CNS37 ± 34 of 4 0.44Down
Larval Salivary gland27 ± 44 of 4 0.32Down
Larval midgut39 ± 101 of 4 0.47Down
Larval tubule89 ± 14 of 4 1.00None
Larval hindgut21 ± 24 of 4 0.26Down
Larval fat body68 ± 64 of 4 0.80None
Larval trachea33 ± 64 of 4 0.39Down
Larval carcass11 ± 51 of 4 0.14Down
S2 cells (growing)114 ± 14 of 4 1.35Up
Whole fly85 ± 94 of 4

Looking for CG33096-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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