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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33100-RA through 18771 annotations produced 1 hits



4EHP (4EHP):

Annotation Number : CG33100
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053100
Gbrowse : chr3R:19889510-19934671 (-) // 100.0 //
Probeset : 1625051_at
Accessions : protein= NP_001163710; /// NP_788729;, nucleotide= NM_001170239; /// NM_176552;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0016281 // eukaryotic translation initiation factor 4F c
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // i
FlyMine data for FBgn0053100.
BDGP gene expression has embryonic in situ data for CG33100: 10 pix of staining in 7 body parts.
BioGrid reports that CG33100 interacts with CG6601 .
TRiP has 1 RNAi stocks for FBgn0053100 available for purchase.
VDRC has 2 RNAi stocks for FBgn0053100 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 14 of 4 0.70Down
Head31 44 of 4 0.50Down
Eye54 44 of 4 0.78Down
Thoracicoabdominal ganglion27 24 of 4 0.40Down
Salivary gland49 83 of 4 0.71None
Crop35 23 of 4 0.50Down
Midgut34 21 of 4 0.50Down
Tubule50 23 of 4 0.70Down
Hindgut41 14 of 4 0.60Down
Heart70 34 of 4 1.00None
Fat body42 94 of 4 0.61Down
Ovary126 54 of 4 1.80Up
Testis162 94 of 4 2.30Up
Male accessory glands38 34 of 4 0.60Down
Virgin spermatheca63 24 of 4 0.90None
Mated spermatheca99 74 of 4 1.41Up
Adult carcass30 22 of 4 0.40Down
Larval CNS55 74 of 4 0.79Down
Larval Salivary gland56 43 of 4 0.80Down
Larval midgut25 10 of 4 0.36Down
Larval tubule23 13 of 4 0.30Down
Larval hindgut35 14 of 4 0.51Down
Larval fat body44 44 of 4 0.60Down
Larval trachea130 144 of 4 1.86Up
Larval carcass52 14 of 4 0.74Down
S2 cells (growing)68 24 of 4 0.97None
Whole fly70 24 of 4

Looking for CG33100-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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