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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33103-RA through 18771 annotations produced 1 hits



papilin (Ppn):

Annotation Number : CG33103
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003137
Gbrowse : chr3R:24346388-24366053 (-) // 100.0 //
Probeset : 1635210_a_at
Accessions : protein= NP_001163760; /// NP_001163761; /// NP_788751; /// NP_788752;, nucleotide= NM_001170289; /// NM_001170290; /// NM_176574; /// NM_176575;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix
Interpro : 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase
FlyMine data for FBgn0003137.
Homophila reports that CG33103 is a close match (2e-11) to human gene CAML1;HSAS1;L1CAM (NP_076493), a gene associated with Corpus callosum, partial agenesis of, 304100 (3);CRASH syndrome, 303350 (3);Hydrocephalus due to aqueductal stenosis, 307000 (3);Hydrocephalus with congenital idiopathic intestinal pseudoobstruction, 307000 (3);Hydrocephalus with Hirschsprung disease and cleft palate, 142623 (3);MASA syndrome, 303350 (3).
BioGrid reports that CG33103 interacts with CG6277 CG4824 CG6763 CG6779 CG6846 CG7254 CG7926 CG8292 CG8580 CG8831 CG9163 .
VDRC has 2 RNAi stocks for FBgn0003137 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain313 ± 204 of 4 1.10None
Head864 ± 174 of 4 3.10Up
Eye256 ± 344 of 4 0.93None
Thoracicoabdominal ganglion158 ± 164 of 4 0.60Down
Salivary gland76 ± 114 of 4 0.27Down
Crop73 ± 74 of 4 0.30Down
Midgut196 ± 114 of 4 0.70Down
Tubule26 ± 24 of 4 0.10Down
Hindgut105 ± 34 of 4 0.40Down
Heart2907 ± 514 of 410.49Up
Fat body176 ± 564 of 4 0.64Down
Ovary49 ± 34 of 4 0.20Down
Testis93 ± 64 of 4 0.30Down
Male accessory glands17 ± 14 of 4 0.10Down
Virgin spermatheca92 ± 74 of 4 0.33Down
Mated spermatheca107 ± 124 of 4 0.39Down
Adult carcass1036 ± 364 of 4 3.70Up
Larval CNS28 ± 84 of 4 0.10Down
Larval Salivary gland13 ± 14 of 4 0.05Down
Larval midgut130 ± 84 of 4 0.47Down
Larval tubule26 ± 74 of 4 0.10Down
Larval hindgut234 ± 84 of 4 0.84None
Larval fat body38 ± 94 of 4 0.10Down
Larval trachea1183 ± 384 of 4 4.27Up
Larval carcass698 ± 624 of 4 2.52Up
S2 cells (growing)612 ± 324 of 4 2.21Up
Whole fly277 ± 164 of 4

Looking for CG33103-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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