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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33106-RA through 18771 annotations produced 2 hits



multiple ankyrin repeats single KH domain (mask):

Annotation Number : CG33106
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043884
Gbrowse : chr3R:20057445-20074578 (+) // 100.0 //
Probeset : 1641226_a_at
Accessions : protein= NP_788733; /// NP_788734;, nucleotide= NM_176556; /// NM_176557;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // i
FlyMine data for FBgn0043884.
BDGP gene expression has embryonic in situ data for mask: 14 pix of staining in 18 body parts.
Homophila reports that CG33106 is a close match (7e-12) to human gene AGS2;NOTCH2 (NP_077719), a gene associated with Alagille syndrome 2, 610205 (3).
BioGrid reports that CG33106 interacts with CG3953 CG4059 CG6378 CG9121 CG3954 CG9375 CG9375 CG12559 CG18085 .
TRiP has 2 RNAi stocks for FBgn0043884 available for purchase.
VDRC has 5 RNAi stocks for FBgn0043884 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain125 44 of 4 0.90Down
Head81 84 of 4 0.60Down
Eye84 104 of 4 0.58Down
Thoracicoabdominal ganglion87 54 of 4 0.60Down
Salivary gland55 24 of 4 0.38Down
Crop177 44 of 4 1.20Up
Midgut132 54 of 4 0.90None
Tubule64 24 of 4 0.40Down
Hindgut142 34 of 4 1.00None
Heart112 124 of 4 0.77None
Fat body166 174 of 4 1.14None
Ovary484 194 of 4 3.30Up
Testis45 24 of 4 0.30Down
Male accessory glands81 114 of 4 0.60Down
Virgin spermatheca94 94 of 4 0.65Down
Mated spermatheca126 104 of 4 0.87None
Adult carcass105 94 of 4 0.70Down
Larval CNS288 434 of 4 1.98Up
Larval Salivary gland124 94 of 4 0.85None
Larval midgut156 94 of 4 1.07None
Larval tubule175 154 of 4 1.20None
Larval hindgut204 34 of 4 1.40Up
Larval fat body160 104 of 4 1.10None
Larval trachea175 314 of 4 1.20None
Larval carcass171 44 of 4 1.17Up
S2 cells (growing)330 44 of 4 2.27Up
Whole fly145 64 of 4



multiple ankyrin repeats single KH domain (mask):

Annotation Number : CG33106
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043884
Gbrowse : chr3R:20057445-20075970 (+) // 100.0 //
Probeset : 1639047_at
Accessions : protein= NP_788733; /// NP_788734;, nucleotide= NM_176556; /// NM_176557;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskeleton // i
FlyMine data for FBgn0043884.
BDGP gene expression has embryonic in situ data for mask: 14 pix of staining in 18 body parts.
Homophila reports that CG33106 is a close match (7e-12) to human gene AGS2;NOTCH2 (NP_077719), a gene associated with Alagille syndrome 2, 610205 (3).
BioGrid reports that CG33106 interacts with CG3953 CG4059 CG6378 CG9121 CG3954 CG9375 CG9375 CG12559 CG18085 .
TRiP has 2 RNAi stocks for FBgn0043884 available for purchase.
VDRC has 5 RNAi stocks for FBgn0043884 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain782 324 of 4 3.60Up
Head369 454 of 4 1.70Up
Eye257 184 of 4 1.19None
Thoracicoabdominal ganglion646 214 of 4 3.00Up
Salivary gland164 84 of 4 0.76Down
Crop255 164 of 4 1.20None
Midgut102 44 of 4 0.50Down
Tubule137 84 of 4 0.60Down
Hindgut191 134 of 4 0.90None
Heart289 214 of 4 1.34Up
Fat body280 414 of 4 1.30None
Ovary452 104 of 4 2.10Up
Testis42 44 of 4 0.20Down
Male accessory glands388 44 of 4 1.80Up
Virgin spermatheca265 234 of 4 1.23None
Mated spermatheca283 164 of 4 1.31Up
Adult carcass188 54 of 4 0.90None
Larval CNS767 584 of 4 3.55Up
Larval Salivary gland269 264 of 4 1.24None
Larval midgut126 84 of 4 0.58Down
Larval tubule206 154 of 4 1.00None
Larval hindgut224 144 of 4 1.04None
Larval fat body124 124 of 4 0.60Down
Larval trachea209 304 of 4 0.97None
Larval carcass208 254 of 4 0.96None
S2 cells (growing)254 244 of 4 1.18None
Whole fly216 174 of 4

Looking for CG33106-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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