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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33110-RA through 18771 annotations produced 1 hits



(CG33110):

Annotation Number : CG33110
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053110
Gbrowse : chr3R:18395910-18406120 (+) // 100.0 //
Probeset : 1634318_at
Accessions : protein= NP_788716;, nucleotide= NM_176539;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0053110.
BDGP gene expression has embryonic in situ data for CG33110: 18 pix of staining in 2 body parts.
Homophila reports that CG33110 is a close match (3e-48) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).
VDRC has 1 RNAi stocks for FBgn0053110 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 03 of 4 0.10Down
Head614 ± 554 of 4 3.50Up
Eye254 ± 154 of 4 1.46Up
Thoracicoabdominal ganglion9 ± 32 of 4 0.10Down
Salivary gland20 ± 60 of 4 0.12Down
Crop68 ± 44 of 4 0.40Down
Midgut2 ± 00 of 4 0.00Down
Tubule6 ± 20 of 4 0.00Down
Hindgut40 ± 54 of 4 0.20Down
Heart50 ± 44 of 4 0.29Down
Fat body66 ± 374 of 4 0.38Down
Ovary1 ± 00 of 4 0.00Down
Testis82 ± 44 of 4 0.50Down
Male accessory glands147 ± 364 of 4 0.80None
Virgin spermatheca14 ± 11 of 4 0.08Down
Mated spermatheca23 ± 73 of 4 0.14Down
Adult carcass863 ± 174 of 4 5.00Up
Larval CNS7 ± 12 of 4 0.04Down
Larval Salivary gland4 ± 10 of 4 0.03Down
Larval midgut4 ± 10 of 4 0.03Down
Larval tubule3 ± 20 of 4 0.00Down
Larval hindgut147 ± 154 of 4 0.85None
Larval fat body13 ± 61 of 4 0.10Down
Larval trachea20 ± 94 of 4 0.12Down
Larval carcass121 ± 284 of 4 0.70None
S2 cells (growing)1 ± 10 of 4 0.01Down
Whole fly173 ± 64 of 4

Looking for CG33110-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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