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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33113-RF through 18771 annotations produced 1 hits



Reticulon-like1 (Rtnl1):

Annotation Number : CG33113
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053113
Gbrowse : chr2L:4993649-5009744 (-) // 100.0 //
Probeset : 1630027_s_at
Accessions : protein= NP_001162875; /// NP_001162876; /// NP_001162877; /// NP_001162878; /// NP_787983; /// NP_787984; /// NP_787985; /// NP_787986; /// NP_787987; /// NP_787988; /// NP_995630;, nucleotide= NM_001169404; /// NM_001169405; /// NM_001169406; /// NM_001169407; /// NM_175969; /// NM_175970; /// NM_175971; /// NM_175972; /// NM_175973; /// NM_175974; /// NM_205908;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic anno
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0053113.
BDGP gene expression has embryonic in situ data for CG33113: 28 pix of staining in 15 body parts.
BioGrid reports that CG33113 interacts with CG6046 CG4463 CG7713 CG9986 .
VDRC has 3 RNAi stocks for FBgn0053113 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1399 ± 544 of 4 1.10None
Head1645 ± 544 of 4 1.30Up
Eye1786 ± 464 of 4 1.46Up
Thoracicoabdominal ganglion1579 ± 614 of 4 1.30Up
Salivary gland1552 ± 664 of 4 1.27Up
Crop2614 ± 484 of 4 2.10Up
Midgut1773 ± 644 of 4 1.50Up
Tubule1901 ± 584 of 4 1.60Up
Hindgut2143 ± 604 of 4 1.80Up
Heart1319 ± 1234 of 4 1.08None
Fat body1972 ± 2634 of 4 1.61Up
Ovary1426 ± 194 of 4 1.20Up
Testis148 ± 64 of 4 0.10Down
Male accessory glands759 ± 164 of 4 0.60Down
Virgin spermatheca1753 ± 654 of 4 1.44Up
Mated spermatheca2612 ± 684 of 4 2.14Up
Adult carcass1473 ± 724 of 4 1.20Up
Larval CNS1421 ± 834 of 4 1.16Up
Larval Salivary gland4172 ± 2074 of 4 3.42Up
Larval midgut3939 ± 1294 of 4 3.22Up
Larval tubule1903 ± 464 of 4 1.60Up
Larval hindgut3672 ± 424 of 4 3.01Up
Larval fat body4117 ± 4404 of 4 3.40Up
Larval trachea1964 ± 1084 of 4 1.61Up
Larval carcass3392 ± 2884 of 4 2.78Up
S2 cells (growing)1372 ± 214 of 4 1.12Up
Whole fly1221 ± 494 of 4

Looking for CG33113-RF. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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