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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG33115-RA through 18771 annotations produced 1 hits

CG33115 (nimB4):

Annotation Number : CG33115
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028542
Gbrowse : chr2L:13968277-13969973 (-) // 100.0 //
Probeset : 1625611_at
Accessions : protein= NP_788046;, nucleotide= NM_176032;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0017147 // Wnt-protein binding // inferred from seq
FlyMine data for FBgn0028542.
Homophila reports that CG33115 is a close match (2e-13) to human gene TNX;TNXB;TNXB1;TNXB2;TNXBS (NP_061978), a gene associated with Ehlers-Danlos due to tenascin X deficiency, 606408 (3);Ehlers-Danlos syndrome, hypermobility type, 130020 (3).
BioGrid reports that CG33115 interacts with CG4785 CG4804 CG4820 CG7605 .
VDRC has 2 RNAi stocks for FBgn0028542 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 34 of 4 2.00Up
Head144 24 of 4 4.40Up
Eye75 114 of 4 2.29Up
Thoracicoabdominal ganglion20 04 of 4 0.60Down
Salivary gland25 20 of 4 0.76None
Crop13 21 of 4 0.40Down
Midgut10 30 of 4 0.30Down
Tubule13 02 of 4 0.40Down
Hindgut13 12 of 4 0.40Down
Heart363 164 of 410.98Up
Fat body174 134 of 4 5.28Up
Ovary4 10 of 4 0.10Down
Testis9 02 of 4 0.30Down
Male accessory glands11 31 of 4 0.30Down
Virgin spermatheca257 114 of 4 7.77Up
Mated spermatheca294 174 of 4 8.90Up
Adult carcass148 54 of 4 4.50Up
Larval CNS6 20 of 4 0.21Down
Larval Salivary gland28 54 of 4 0.85None
Larval midgut15 20 of 4 0.46Down
Larval tubule21 04 of 4 0.70Down
Larval hindgut30 24 of 4 0.92None
Larval fat body1151 964 of 434.80Up
Larval trachea68 54 of 4 2.07Up
Larval carcass159 144 of 4 4.83Up
S2 cells (growing)10 04 of 4 0.32Down
Whole fly33 24 of 4

Looking for CG33115-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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