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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33120-RA through 18771 annotations produced 1 hits



(CG33120):

Annotation Number : CG33120
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053120
Gbrowse : chr2L:18841398-18844557 (-) // 100.0 //
Probeset : 1635862_at
Accessions : protein= NP_788073;, nucleotide= NM_176059;
FlyMine data for FBgn0053120.
VDRC has 2 RNAi stocks for FBgn0053120 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 14 of 4 0.20Down
Head269 164 of 4 4.00Up
Eye126 254 of 4 1.90None
Thoracicoabdominal ganglion12 23 of 4 0.20Down
Salivary gland11 30 of 4 0.17Down
Crop8 02 of 4 0.10Down
Midgut213 114 of 4 3.20Up
Tubule12 22 of 4 0.20Down
Hindgut33 24 of 4 0.50Down
Heart476 174 of 4 7.15Up
Fat body1462 1204 of 421.92Up
Ovary0 00 of 4 0.00Down
Testis3 00 of 4 0.00Down
Male accessory glands5 31 of 4 0.10Down
Virgin spermatheca2022 404 of 430.32Up
Mated spermatheca1887 1474 of 428.30Up
Adult carcass466 334 of 4 7.00Up
Larval CNS3 21 of 4 0.06Down
Larval Salivary gland29 34 of 4 0.44Down
Larval midgut385 254 of 4 5.78Up
Larval tubule7 12 of 4 0.10Down
Larval hindgut25 24 of 4 0.38Down
Larval fat body926 864 of 413.90Up
Larval trachea11 83 of 4 0.17Down
Larval carcass8 03 of 4 0.13Down
S2 cells (growing)1 00 of 4 0.03Down
Whole fly66 14 of 4

Looking for CG33120-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime