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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33122-RA through 18771 annotations produced 1 hits



gilead (cutlet):

Annotation Number : CG33122
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015376
Gbrowse : chr2L:3707225-3711674 (-) // 100.0 //
Probeset : 1627253_at
Accessions : protein= NP_787969;, nucleotide= NM_175955;
Pathway : 0005634 // nucleus // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author
FlyMine data for FBgn0015376.
BDGP gene expression has embryonic in situ data for cutlet: 13 pix of staining in 9 body parts.
BioGrid reports that CG33122 interacts with CG14999 CG6258 .
VDRC has 2 RNAi stocks for FBgn0015376 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 04 of 4 0.10Down
Head8 22 of 4 0.10Down
Eye5 02 of 4 0.07Down
Thoracicoabdominal ganglion10 13 of 4 0.10Down
Salivary gland14 40 of 4 0.17Down
Crop13 14 of 4 0.20Down
Midgut8 12 of 4 0.10Down
Tubule7 11 of 4 0.10Down
Hindgut10 14 of 4 0.10Down
Heart5 00 of 4 0.06Down
Fat body15 62 of 4 0.19Down
Ovary215 54 of 4 2.60Up
Testis76 34 of 4 0.90None
Male accessory glands9 21 of 4 0.10Down
Virgin spermatheca11 11 of 4 0.13Down
Mated spermatheca12 22 of 4 0.15Down
Adult carcass10 11 of 4 0.10Down
Larval CNS82 14 of 4 0.98None
Larval Salivary gland58 24 of 4 0.69Down
Larval midgut11 13 of 4 0.14Down
Larval tubule10 04 of 4 0.10Down
Larval hindgut29 24 of 4 0.35Down
Larval fat body20 63 of 4 0.20Down
Larval trachea55 44 of 4 0.66Down
Larval carcass36 14 of 4 0.44Down
S2 cells (growing)52 24 of 4 0.62Down
Whole fly84 54 of 4

Looking for CG33122-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime