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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33123-RA through 18771 annotations produced 1 hits



(CG33123):

Annotation Number : CG33123
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053123
Gbrowse : chr2L:3510476-3514662 (-) // 100.0 //
Probeset : 1623193_at
Accessions : protein= NP_787968;, nucleotide= NM_175954;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred fr
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004601 // peroxidase activity // inferred from
FlyMine data for FBgn0053123.
BioGrid reports that CG33123 interacts with CG7809 .
TRiP has 1 RNAi stocks for FBgn0053123 available for purchase.
VDRC has 2 RNAi stocks for FBgn0053123 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 24 of 4 0.40Down
Head119 64 of 4 0.50Down
Eye237 304 of 4 0.95None
Thoracicoabdominal ganglion102 14 of 4 0.40Down
Salivary gland227 94 of 4 0.90None
Crop145 24 of 4 0.60Down
Midgut124 14 of 4 0.50Down
Tubule167 244 of 4 0.70Down
Hindgut101 34 of 4 0.40Down
Heart133 74 of 4 0.53Down
Fat body236 174 of 4 0.94None
Ovary411 94 of 4 1.60Up
Testis66 14 of 4 0.30Down
Male accessory glands453 64 of 4 1.80Up
Virgin spermatheca167 114 of 4 0.67Down
Mated spermatheca220 114 of 4 0.88None
Adult carcass135 34 of 4 0.50Down
Larval CNS244 164 of 4 0.97None
Larval Salivary gland532 204 of 4 2.12Up
Larval midgut87 84 of 4 0.35Down
Larval tubule75 24 of 4 0.30Down
Larval hindgut176 114 of 4 0.70Down
Larval fat body71 24 of 4 0.30Down
Larval trachea220 464 of 4 0.88None
Larval carcass280 314 of 4 1.11None
S2 cells (growing)473 54 of 4 1.88Up
Whole fly251 84 of 4

Looking for CG33123-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime