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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33124-RA through 18771 annotations produced 1 hits



(CG33124):

Annotation Number : CG33124
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053124
Gbrowse : chr2L:2206795-2208906 (-) // 100.0 //
Probeset : 1638421_at
Accessions : protein= NP_001097056;, nucleotide= NM_001103586;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from sequence or structural similarity /// 0005215 // transporter activity /
FlyMine data for FBgn0053124.
Homophila reports that CG33124 is a close match (2e-49) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).
VDRC has 2 RNAi stocks for FBgn0053124 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.60None
Head1 00 of 4 0.40None
Eye2 00 of 4 0.49None
Thoracicoabdominal ganglion5 20 of 4 1.10None
Salivary gland20 21 of 4 4.44Up
Crop7 20 of 4 1.70None
Midgut12 20 of 4 2.60None
Tubule8 20 of 4 1.90Up
Hindgut11 10 of 4 2.50Up
Heart5 00 of 4 1.14None
Fat body7 50 of 4 1.53None
Ovary2 00 of 4 0.40None
Testis3 10 of 4 0.70None
Male accessory glands17 10 of 4 3.90Up
Virgin spermatheca10 40 of 4 2.36None
Mated spermatheca9 10 of 4 2.08Up
Adult carcass9 30 of 4 2.00None
Larval CNS2 10 of 4 0.50None
Larval Salivary gland5 10 of 4 1.15None
Larval midgut17 20 of 4 3.72Up
Larval tubule34 54 of 4 7.50Up
Larval hindgut16 12 of 4 3.53Up
Larval fat body7 20 of 4 1.70None
Larval trachea4 40 of 4 1.01None
Larval carcass27 52 of 4 6.11Up
S2 cells (growing)3 00 of 4 0.68None
Whole fly4 10 of 4

Looking for CG33124-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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