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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33126-RA through 18771 annotations produced 1 hits



Neural Lazarillo (NLaz):

Annotation Number : CG33126
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053126
Gbrowse : chr2L:1359982-1361732 (-) // 100.0 //
Probeset : 1630593_at
Accessions : protein= NP_787960;, nucleotide= NM_175946;
Pathway : 0005615 // extracellular space // inferred from direct assay
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // non-traceable author st
FlyMine data for FBgn0053126.
BDGP gene expression has embryonic in situ data for NLaz: 15 pix of staining in 5 body parts.
BioGrid reports that CG33126 interacts with CG6156 .
VDRC has 3 RNAi stocks for FBgn0053126 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain211 ± 44 of 4 0.60Down
Head431 ± 164 of 4 1.20None
Eye152 ± 264 of 4 0.44Down
Thoracicoabdominal ganglion349 ± 544 of 4 1.00None
Salivary gland17761 ± 10244 of 451.18Up
Crop739 ± 994 of 4 2.10Up
Midgut1230 ± 524 of 4 3.50Up
Tubule1381 ± 1514 of 4 4.00Up
Hindgut819 ± 254 of 4 2.40Up
Heart411 ± 264 of 4 1.18None
Fat body49 ± 154 of 4 0.14Down
Ovary70 ± 114 of 4 0.20Down
Testis225 ± 104 of 4 0.60Down
Male accessory glands511 ± 1074 of 4 1.50None
Virgin spermatheca227 ± 414 of 4 0.66None
Mated spermatheca358 ± 584 of 4 1.03None
Adult carcass522 ± 684 of 4 1.50None
Larval CNS47 ± 34 of 4 0.14Down
Larval Salivary gland10 ± 41 of 4 0.03Down
Larval midgut51 ± 44 of 4 0.15Down
Larval tubule131 ± 144 of 4 0.40Down
Larval hindgut20 ± 32 of 4 0.06Down
Larval fat body1222 ± 2564 of 4 3.50Up
Larval trachea82 ± 814 of 4 0.24Down
Larval carcass21 ± 81 of 4 0.06Down
S2 cells (growing)4 ± 10 of 4 0.01Down
Whole fly347 ± 304 of 4

Looking for CG33126-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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