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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33134-RA through 18771 annotations produced 1 hits



deborg (debcl):

Annotation Number : CG33134
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029131
Gbrowse : chr2R:2536245-2540336 (+) // 100.0 //
Probeset : 1629916_at
Accessions : protein= NP_788278;, nucleotide= NM_176098;
Pathway : signal transduction resulting in induction of apoptosis // inferred from mutant phenotype /// 0042981 // regulation of
Interpro : 0005740 // mitochondrial envelope // inferred from direct assay /// 0005741 // mitochondrial outer membrane // inferred
FlyMine data for FBgn0029131.
BDGP gene expression has embryonic in situ data for debcl: 28 pix of staining in 5 body parts.
BioGrid reports that CG33134 interacts with CG5315 CG6156 CG6357 CG6829 CG8238 .
TRiP has 1 RNAi stocks for FBgn0029131 available for purchase.
VDRC has 5 RNAi stocks for FBgn0029131 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain109 ± 14 of 4 0.50Down
Head186 ± 34 of 4 0.80Down
Eye195 ± 104 of 4 0.85None
Thoracicoabdominal ganglion134 ± 14 of 4 0.60Down
Salivary gland190 ± 94 of 4 0.83Down
Crop252 ± 74 of 4 1.10None
Midgut80 ± 04 of 4 0.30Down
Tubule1474 ± 4584 of 4 6.40Up
Hindgut199 ± 84 of 4 0.90None
Heart182 ± 34 of 4 0.79Down
Fat body266 ± 224 of 4 1.15None
Ovary487 ± 94 of 4 2.10Up
Testis139 ± 74 of 4 0.60Down
Male accessory glands180 ± 104 of 4 0.80Down
Virgin spermatheca336 ± 284 of 4 1.46Up
Mated spermatheca337 ± 214 of 4 1.46Up
Adult carcass215 ± 54 of 4 0.90None
Larval CNS72 ± 64 of 4 0.31Down
Larval Salivary gland224 ± 144 of 4 0.97None
Larval midgut83 ± 84 of 4 0.36Down
Larval tubule187 ± 104 of 4 0.80Down
Larval hindgut127 ± 54 of 4 0.55Down
Larval fat body94 ± 114 of 4 0.40Down
Larval trachea192 ± 154 of 4 0.83Down
Larval carcass167 ± 84 of 4 0.72Down
S2 cells (growing)588 ± 134 of 4 2.55Up
Whole fly231 ± 114 of 4

Looking for CG33134-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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