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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33158-RB through 18771 annotations produced 1 hits



(CG33158):

Annotation Number : CG33158
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053158
Gbrowse : chr3L:16412893-16489660 (+) // 99.69 //
Probeset : 1624658_at
Accessions : protein= NP_788515;, nucleotide= NM_176337;
Pathway : 0005850 // eukaryotic translation initiation factor 2 complex // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activi
FlyMine data for FBgn0053158.
Homophila reports that CG33158 is a close match (2e-12) to human gene COXPD1;EFG1;GFM;GFM1 (NP_079272), a gene associated with Combined oxidative phosphorylation deficiency 1, 609060 (3).
VDRC has 7 RNAi stocks for FBgn0053158 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 ± 04 of 4 0.50Down
Head31 ± 14 of 4 0.60Down
Eye22 ± 04 of 4 0.39Down
Thoracicoabdominal ganglion38 ± 44 of 4 0.70Down
Salivary gland39 ± 54 of 4 0.69Down
Crop37 ± 24 of 4 0.70Down
Midgut44 ± 54 of 4 0.80None
Tubule34 ± 43 of 4 0.60Down
Hindgut34 ± 24 of 4 0.60Down
Heart27 ± 24 of 4 0.48Down
Fat body33 ± 74 of 4 0.58Down
Ovary85 ± 54 of 4 1.50Up
Testis76 ± 14 of 4 1.30Up
Male accessory glands59 ± 44 of 4 1.00None
Virgin spermatheca20 ± 14 of 4 0.36Down
Mated spermatheca31 ± 24 of 4 0.55Down
Adult carcass37 ± 14 of 4 0.70Down
Larval CNS74 ± 44 of 4 1.31Up
Larval Salivary gland76 ± 34 of 4 1.34Up
Larval midgut36 ± 14 of 4 0.64Down
Larval tubule46 ± 24 of 4 0.80Down
Larval hindgut48 ± 34 of 4 0.86None
Larval fat body45 ± 34 of 4 0.80None
Larval trachea93 ± 144 of 4 1.65Up
Larval carcass68 ± 44 of 4 1.21None
S2 cells (growing)54 ± 24 of 4 0.97None
Whole fly56 ± 24 of 4

Looking for CG33158-RB. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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