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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33162-RA through 18771 annotations produced 1 hits



chr3L:8712366-8713317 (-) // 100.0 // (Signal recognition particle receptor beta):

Annotation Number : CG33162
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630713_at
Accessions : protein= , nucleotide= NP_788485;
Pathway : 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from sequence or structural similarit
Interpro : 0005785 // signal recognition particle receptor complex // inferred from sequence or structural similarity
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain71 24 of 4 0.80None
Head60 104 of 4 0.60Down
Eye65 14 of 4 0.69Down
Thoracicoabdominal ganglion68 24 of 4 0.70None
Salivary gland398 154 of 4 4.22Up
Crop72 24 of 4 0.80None
Midgut103 34 of 4 1.10None
Tubule20 20 of 4 0.20Down
Hindgut70 34 of 4 0.70None
Heart112 64 of 4 1.19None
Fat body125 64 of 4 1.33Up
Ovary131 54 of 4 1.40Up
Testis22 24 of 4 0.20Down
Male accessory glands365 84 of 4 3.90Up
Virgin spermatheca50 64 of 4 0.54Down
Mated spermatheca73 84 of 4 0.78None
Adult carcass88 64 of 4 0.90None
Larval CNS86 104 of 4 0.91None
Larval Salivary gland576 354 of 4 6.11Up
Larval midgut102 124 of 4 1.08None
Larval tubule73 24 of 4 0.80None
Larval hindgut109 34 of 4 1.16None
Larval fat body94 114 of 4 1.00None
Larval trachea218 614 of 4 2.32Up
Larval carcass159 104 of 4 1.69Up
S2 cells (growing)737 64 of 4 7.82Up
Whole fly94 94 of 4

Looking for CG33162-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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